G82353


Basic Information

Item Value
gene id G82353
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38558466 ~ 38564283 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102776
GATGGCCACAGGACTGCCTCTTTCCAAAGGGCAGCAGGGCAGCTGTCCTCACATTATTTCAGCAATACGGGGGCACCGTCTTGTCTTGTAGGCCTGGATTAAGAATAACATGTACAAGATGCAGACTGCTATGGACTGATTCCCCAGGTACATGATCCCCTACCCCACGTCACGTTCAATACAGGAGCAAGACATACGACAGCAGGCCAAggtgaaagtatttattttacacgGGAGATAAACCTTAGTTTCCAACGTATTTATCGGCACTATCTTTTCAATCTTTACAACTTTTTAACTTTTAGCATATTGTTATAATACAGATTTTCGACAGCATTCCATATGCCTTTGACGGCACCGATCGGTCTGCCATTCCCTCGCTGGGACATGTGAGGAACAGACCACTTTAAACACCAGGGAACACAGCCAGTCGCTTCAGAAGCTGCACTTTTATTGTTCTAATGTATTGGAGGGTTAAAACAGGGTTGTGTTGTGGAATTTCACTGCATTTTCACTAATCTAATCTTCAtgcagtgaaataaatgtagaaCAAGTGTCATGAAACATGGCAATAAATTAGCATATaatttacaaatggaaaaaaaaaaattagtaaCAGTGTACCAACATTaatactgaatataaaatataagcaactaatcacaataaaatatatatacacacatatatatatattgtttttgtttctgctggTAAAGTAGAGCAATGTGACATTCACATCATGTGACAGCAGAAAGTTATAGTGTGGAATGGTCTGTGATGGGGGGAGTCTCGTAGTTCAAACAGTCCATGACGGGGGGGAAAGTCTTGTTCTGCAGGCTCTTTGACAACATTTCCAGCTTTAGAAAagtattgtattgatttatttatttcaattaacaaaaacaacatacgATCTTCAGTGTCTGAGGCCTGTGCACACATGGGGTTGGTTTATTGTTCCATGGTGTAGTTTATGATGAAAGGTATCGGCTGAAATCGCACCGGTGGCTACAGAGTAGCAGcagcaaaaaacaacactatgGTGGTGTGATCAGTTTCTTAACGATGAGTCATGATGCTCATCGATCAGGtcccatcttttttttttttttaagaaattgttttattgtacctttacatctatctatctatctatctatctatctatataaatatgtgtctgtgtggtgttCCCTTTTCACAAAGTGATTCCAAGATTGTGCATCACATCTTCCTAATCACTGAAGCCCCCTTGAGGAGGGGGCGTTATAGAACGTAGCACCACTCGGAAAGACGAGGGGAGAAACGCATCTGTGGACACGGTCTTCTCAATGTCGATACCCAGTGTGAGGTAAAGAGAAGGTGGTCACTGATTCACTTAACAGACAAAGTCTCTCAAAAGTCACATGAGCTACTGTTTGAGCCCCAGGCAGATCGACTGACTGTCCTGTCAGCGGGGCAACACGAAGACTGCAGGCCTCCACTTCTCCTGTATCCCTCCACATGAGGCGGGGCAGGAGAGCACCGAGGTAGGCTGTGCATTCCCTCTGAAGCGATGTGCGGAAGGgttttttttactgtacagCCATTATCTGTACATAAAGCACCATCAGCGTTTGTTTGATTCGTCCTACGATTCCATATCTGCACTCACCATGACAGCGTGGCCGCGAGACAGAGCGCATCCCTTTGCAGGAGAGAGCAAAGCAAACACATTGTCCAGAGGTAGAAGTAATGGGCTGGTTCTCAGGAACGCATCCTGTGAGGGCCTGCAGGCGTCGCGATGGTCCTGCACAGGGGGTTCAAGCACTGCTCCTTGATTCCTCAGCACAGGTACATCCATGGTTTGTTACCGTCACAAACATGAGCTCTTAATGGATCAATATGATGATAATGCAACATTTCAAAGGACAGTCAAACCATCTGGCAGGCAAAATCTTTTGCAAGGTTCCCTGCTTTAATATCATAATTGTAACCATCCCCTCCACTAGTCCCGTTCATGCACAGTGACAGCGTTGACCAGTTTAATGGGCCTGTTTTGGATCAATCATATTTTGTCCTTTAAATGAACTAATGATGTGTTAGTTTTCTTCTGAAGCAATGACTTGCAGTAGTGTTATCACTGGACTCAGCTGCGGAATAAGAAAGGACCAGCTGGtcctctttgttttcttctattgACTTTGTGTCCACAGTCCGTCATTCAACAGAGTTTCAGCTAAGTACAGTGTTTAAGCTCCTGTGCATTTCACACTTACCACAacctgtatataataaatattaatattcttaGCCAGGCTAAAGCACCCTCTCTCATTCACATTAGTTCTTTATCTGATAACACTTTTGACTCACTctaaccactttttttttttttttttttagcaaataGTGAGCAACATTCAATTTGAAGACATCTGTATTTGATCACGTATGTAcactgcacaaaaacacaatgaagcatattgttttaaaagtgccattaaaataatttgttttacatttaacttatatatacacatacatatatacacatgcatatatatacatgcatatacacacacacatatatatatgcatatatattatatattatacacaccccccctatagaaagtctacacaacgctcaacattttcacattctgttgccttatagcctggaatttaaatgcaataaaatgtattgtttttaattttcatttaaaaaaatattctggaaatttgtaggaaattaaaaataaaaacttgagtTTGGATAAGTGTGCACctcccttgtaatagcaatcttAAATTAACTCGTGTAAGCAGTCATCTTCAAAATCAAACACCAAGTGgtgttaaattataataattgacaatttcaggatacattcagcagttcctgtaggttccctcagctgggtagtgcatttcaaagcaaagactcaaccatgagcaccaaggagctctGGGACAATGTTGTTGAAAATCAAATCTGGTGatgggttttaaaaaaaaaaaaaagcattgaataTCTCTTGGAGGACAGTCAAAATGATTATTAAGAGGTGGAAGGTGTTTGgcactgcctagatcaggctgtccctctAAACTTGATGACTAAGCAAGAAGGAGACCGATCAGAGAGTCTTCCAAGAggtcaatggcaactttgcaaaaCTACAGGCTATTATGACGAAGACTGGGGCACTTGATAGGATAGAAGGGATAATTAATGGAGTGAAGTACAGAAAAGTACTTGAGGAAagcctgctgccctctgcaagaaagttgaaactgggatggaagttcacttttcagcaggacaatgacccaaagcacacagccaaaaatgtccttgagtggacCAGTCAGAGCCCTGAACTAAACccaactgaaaatgtgtggcatgacttgaggattgctgtccatcaacgctccccaaggaactgGACAAagtttgaacagttttgtttggaagaatggtcaaatattgcccaATCTAGGTGTGTAAAACTGGTAAAGACCCAACACATAAAGGAGCTTCcaccaggggtgggggggaaacttatccaattataatttttcaggtttctatttttaatataattttttcataATAACTTTTCCCTCAACGGTAATGGattatggtgtgtagataagtataaaaatttatttaaatacatgaaactctagactttctataggcactgtacatatataatatatacacatacatacacgtatatatgtatatacttatataaaacacatacagacgaatatatgtatattttcttttccattgcACTAGGATAAAAAGAGGAGGAGCTGaacaacaaaatgcacattCATCAGGAAACTGAAGTGTtcaagtactgtatataatctGGTAAAGACTGACTGACATGATCCCAAACCAGCACAGACGCCCTCCAGCCCCCCGCTGACCTCGGGGTTTTCTCATTCAAAACCATGAATGCCAGGAAACATTCTGCTGGAGTCCAAGCTTCTTGTAAGATCTTGCTTGAGGAATCAAAGGAGTGCTGTGTACGGCTATCGGCagctgttttcagtttgttttgagttttctttttcttttaagctGCTCTAAAGTAGGTCTGATTCGTATTCTCTCCCCTAACTTTTAAACAAAAGGTTTATTCTttggctgtgtctgtgtgccctTAAGTGGCACAGACAATAACTGTGCCTGCTTATTAAAACAGGTGTCTCTCCTGTCTAAACAAAGAAACATCTGGAACCCCTTTCTTTAATTCGGCTATTTTTCCCCCTCCACAGCACAGCTTAAAGGTGAGTCTGTTAACACACTGGAGCAGCCAGTGCTTGTAAGCCATGTCTCTAGCATGGTGGTCTTCTAGCCAGGAGAAGCGTCTCTAAAAGCCTGTGTGGTCGTGGTCACTCCGTAGCGAGTGACGCCAACACGGGGGGCGAGGAGGGTGGTGCGACGTGAGCCTCAGGCACCGGCACACTTCCACCGCGCTGGAAAAGCCTCCGAATGTTAAATGCCACCCACCGCTTCACCCTGTCTGCTGCATGAAGGTCAAGCacttttttctggttttatgcctttttttttttttcatctttccCCTACTGAATTAAAAACCCCACATCAACAAACTGGTGTTAAAGCCATTACATAGGATACGATCCAGGTATTTGTGTCTAAGCATGCCGAAGGGAGACGGGGCTTTGAGTCACCCTAGTAGCCCAACCTCCCCATTTAATAGAGACAAGAGCAGTTTTCTTATTATGGCTCACAATGGTGTACTTAGGAGATGCATAAATGCCCCCCCCACATGGTAGATGGAATGACTTTTTGAGCTTGTGTTTCACTGGAGCACACTGTCAGACTCACAATGCCTTCACTATAGATTTGACACCTGCCTGGGTGCTGCTAAAATGTGTCATAATCCTTTGATGAAGACAATTGATCAGGAGCATCCAAAGACTGGTTACTCACGTTCATGGATTTACCGTTGGACAAGAAAGGGCAAGTCTGTTTTAAAACGGGAGAAGCGAAGGGGATGGATACTGTGCACACAGCCCTGCACGTGGCGCTAAAGCCTGTGTGTGGATTTCACATGGACCGGTCCAGTCCGGTCCACTGGCGGCATCACTCTGTTTCTGGGATGAGCAGTTACTCAAGAGTATGCAAAGAGTTCTCCAGCCGGCAGCTGTCAGCTTTGCTTTAAACGTCACGTGAATCTCCAATGAGAGTGCACACTCAACTGTGTCCAGCACTttggattaaaaacaacaaaattacacacacaaaaaaacaacaaaaaaagaaaaaacatccaagTTTCCACTTCAcagaagttaaaataatattgaaatgctGTCAGCGCAGGCTGACCAGTGGTTACGTTTTCCACAGGGTAAAAAGCACAGGCCGGGGATCCAAACCATTCAATCCCTTCTGTTCCCTCGTAACGCATTCCTTTCATTCCTCGTGTGGCTCCTCATATTGACTGACACGGTTTTGATGGTGGAACAACAagacccctctctccccctccctctctctctccatttcgcTCTGTCTCGCCCCGTCTCTTCGGGTCAGTGTCCTTGGCAAGTCTTGCAGCACATCTGCCTGAAGTACGCTCGGCTGCAAAACTTGAACTTCAGCACCAGTGGGCAGTATGCCACCTTGTTTACATCTTTGCATTCTGGAAGggaaacacagtttaaaaaatatattaaaaactagGAATTTGAGTAAATGAACACTGGCAATAAGGAGGAAAAACCTGACAAGACGGTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102776 True 5785 lncRNA 0.42 2 38558466 38564283

Neighbor

gene id symbol gene type direction distance location
AMCG00010669 NA coding upstream 23656 38515937 ~ 38534810 (+)
AMCG00010671 NA coding upstream 70180 38487689 ~ 38488286 (+)
AMCG00010670 NA coding upstream 70939 38484121 ~ 38487527 (+)
AMCG00010661 NA coding upstream 84305 38468372 ~ 38474161 (+)
AMCG00010660 cops4,csn4,LOC106562268,LOC107685106 coding upstream 99530 38447303 ~ 38458936 (+)
AMCG00010672 ppwd1 coding downstream 67521 38631804 ~ 38633945 (+)
AMCG00010673 trappc13,LOC107667267 coding downstream 88602 38652885 ~ 38661453 (+)
AMCG00010684 NA coding downstream 107914 38672197 ~ 38673526 (+)
AMCG00010675 NA coding downstream 107941 38672224 ~ 38675740 (+)
AMCG00010674 NA coding downstream 115525 38679808 ~ 38684359 (+)
G82339 NA non-coding upstream 75142 38477219 ~ 38483324 (+)
G82338 NA non-coding upstream 83358 38474850 ~ 38475108 (+)
G82285 NA non-coding upstream 133417 38423480 ~ 38425049 (+)
G82250 NA non-coding upstream 270938 38285579 ~ 38287528 (+)
G82234 NA non-coding upstream 401868 38156397 ~ 38156598 (+)
G82468 NA non-coding downstream 462801 39027084 ~ 39027418 (+)
G82488 NA non-coding downstream 538637 39102920 ~ 39103266 (+)
G82495 NA non-coding downstream 587524 39151807 ~ 39152153 (+)
G82520 NA non-coding downstream 652544 39216827 ~ 39217078 (+)
G82521 NA non-coding downstream 655636 39219919 ~ 39220207 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other upstream 185815 38367669 ~ 38372651 (+)
AMCG00010655 NA other upstream 204504 38348278 ~ 38353962 (+)
AMCG00010648 NA other upstream 306456 38247021 ~ 38252010 (+)
G82236 NA other upstream 388935 38169156 ~ 38169531 (+)
G82192 NA other upstream 670303 37886220 ~ 37888163 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other downstream 72193 38636476 ~ 38640125 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other downstream 217796 38782079 ~ 38797886 (+)
AMCG00010695 NA other downstream 678574 39242857 ~ 39248625 (+)
G82671 NA other downstream 1284663 39848946 ~ 39849369 (+)
G82723 NA other downstream 1482803 40047086 ~ 40049815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G126401 NA non-coding NC_047602.1 CM018548.1 3568989 ~ 3575303 (+)