G82637


Basic Information

Item Value
gene id G82637
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39678473 ~ 39695118 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU103138
AGTCTGGCTCTGCGGCGGCGCAAGCGGCGGCTCTGGCTGCGGGCCAGGCAGCACCAGAATTAGCTCATTGTTAGGATATACAGTGCAGAGCCAGTCCGCTCCAACCCAGCCTTGGGGAGGGAGGCTTTTTCCGAGGGCTGCACTCTGCCTTCTCCTTCCCTGTTTGCAGCGGTGTACCCCGGCTCTGCGTGCATGTAGGGCAGCAGGAGGCGGCGCGGCTGGTCGGTCTGGTGCTCGCCTTCAGAAGAGCAGCAGCGGTGCGCCAGTGTCCCAGCTGCTGATCATGACACCAGCTTCGGGATGAGACTGAGACCAGCAGCCACGATGGGGCTTCTCCGGAGGGACGCCTGCAGGCTGCCCTCCCGGTTGAGGTCGAAGGGGATCCACGACACCAACTCTCCGCTCTGGCCTCCTGCTGTCGGCTGACcggggaagaaaagaaaaaaaaaaaagaaaaaaaaaaaaaaggaaatgtgtgtatatatatatatatattacctcCTATTTTTCCTGAATCATATATCTTCcatttgtaatgatttggtGTGTGGGTATAGATGAGATCATAACAAAAATGggactttattttctcttattttttaaagtatcaTTATTAAACAAACGGAATAAATAACGTGTAGGTATGTCTGGGACTCTAAGCCTTGCTGATcggtatttatatttctttccgGAAACGTcaaatgacacaaaacaaatcaagacaGACCTGGCAGATTTGAGCGACGGCAACATCGATACTGTGAGTCCATGTTTACAATCGCCACAGGGGGGCCGCGGACCCCGGTCACTGTTGAAGCAGCATGTCTTCCACTTCTCACCGTACATGCGTGACGGCTCAATACCTATCTATGTACACACTCTTGACAGGATTTTACTAAGGCTGAGAGTCCCCTCTTTCTGCTTAttagattttacttttcttttttgtttgttcgttcGTTCGTTCGTTCGTTCGTTCGTTCGTTTGACTTTGCCAGTATAAACCCATATGTTAGCCATGTTCATGTTGATGTATAGAAGTAGTTGTAGAATTGCATTGTTTCCTTGTGGTAAGTGATTGAGATGCTGCCACGGATTTGAGACACTGATGAATGGTGCTATTTTGGACTTTATATCTGCTCCTTGGTAAGGTAGCTCTGATgggttattatgattattattttgtttttgttttgttgttttattttcatgttctGAGATGGTGTTGGCTCTTTGTCGTCTGGTTATTGTTACTTGGTCTGGATTGACTTGTTTTTCTGTCGTTTTCTGTGTGGCTTTCTCGCTGGGTACAGGACAAAGATGATCACatgcatgagagagagaaaaggcagaGAGGTTTACATCCGAGGGAGTTCTCTGGAGGGACAGGCAAGATTTGTATAGGGGGGAGCAATCACAAAACTGcaatcttcaaatatttttaccTTTGAATGCCAAGATGCCAATTCAACGACCTGGTATGATTCCCTGACACTCGTTATGAAGGCTAAAATGGTCCAAACGCATCTACAAGCGCACGAATCctgttgaaaacaaattaaacgcTTCCTTAAAACCGAATGAATGAGTGATGACTTATACTGTACAATCATCTGAGGTCCATAAAAactttgtcagggaaccaaccagagagagagcatgcattgacttgatcttttcaaatNNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103138 True 1689 lncRNA 0.45 4 39678473 39695118

Neighbor

gene id symbol gene type direction distance location
AMCG00010708 NA coding upstream 23133 39615136 ~ 39655340 (+)
AMCG00010707 NA coding upstream 85228 39575604 ~ 39593245 (+)
AMCG00010703 NA coding upstream 120260 39549522 ~ 39558213 (+)
AMCG00010701 NA coding upstream 172715 39499001 ~ 39505758 (+)
AMCG00010702 NA coding upstream 189499 39479277 ~ 39488974 (+)
AMCG00010715 NA coding downstream 108184 39803302 ~ 39803661 (+)
AMCG00010712 NA coding downstream 118314 39813432 ~ 39834594 (+)
AMCG00010714 NA coding downstream 150655 39845773 ~ 39853457 (+)
AMCG00010717 atp5a1,LOC104922468,LOC103357988 coding downstream 174054 39869172 ~ 39875972 (+)
AMCG00010719 NA coding downstream 189314 39884432 ~ 39891626 (+)
G82620 NA non-coding upstream 131594 39546541 ~ 39546879 (+)
G82561 NA non-coding upstream 169221 39456755 ~ 39509252 (+)
G82548 NA non-coding upstream 304410 39371698 ~ 39374063 (+)
G82545 NA non-coding upstream 371319 39306929 ~ 39307154 (+)
G82523 NA non-coding upstream 439985 39235825 ~ 39238488 (+)
G82638 NA non-coding downstream 2435 39697553 ~ 39697774 (+)
G82639 NA non-coding downstream 4043 39699161 ~ 39699367 (+)
G82643 NA non-coding downstream 14045 39709163 ~ 39710896 (+)
G82644 NA non-coding downstream 15845 39710963 ~ 39716180 (+)
G82665 NA non-coding downstream 90041 39785159 ~ 39785468 (+)
AMCG00010695 NA other upstream 429848 39242857 ~ 39248625 (+)
AMCG00010687 srek1,LOC107684347,LOC107730337,LOC107681054 other upstream 880587 38782079 ~ 38797886 (+)
AMCG00010681 trim23,LOC107558665,LOC106562204,LOC106568315 other upstream 1038348 38636476 ~ 38640125 (+)
AMCG00010656 hnrnpdl,hnrpdl,LOC106562358,LOC107653490 other upstream 1305822 38367669 ~ 38372651 (+)
AMCG00010655 NA other upstream 1324511 38348278 ~ 38353962 (+)
G82671 NA other downstream 153828 39848946 ~ 39849369 (+)
G82723 NA other downstream 351968 40047086 ~ 40049815 (+)
AMCG00010735 clg14h18orf25 other downstream 857249 40552367 ~ 40566357 (+)
AMCG00010738 NA other downstream 881628 40576746 ~ 40586122 (+)
G82939 rpl37 other downstream 993399 40688517 ~ 40690850 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G370150 NA non-coding CI01000168 null 100988 ~ 109227 (+)