XLOC_006059 (spock2)


Basic Information

Item Value
gene id XLOC_006059
gene name spock2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30054996 ~ 30132256 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011957
GCGCGCACTCGCTGACAAACCTGATAGCAGCAGCAGCTCTCAGCGTCTTCatcgcctctctctctctctctctctctctctctctctctctctctctctctccctctacaGAGGGAAGACGCATCCTGTAATCAGGTCACACTTCACTGTAGTCTCAGCATCATCCGTCTCTCGCATTTTAAAGCAGAGGAATCGAGTCACCGGACCCGCGGAATAATGGTGTGGATGAATAATCCGGGATGTGTTCTCGTCCCGCTGCTGATGCTCGTGCGTGTGGCCATGCAGGTGGACGTTAAGAGCGGGAAAGAAGCGGAGAAAACGGGGAATTTCATGGAAGATGAGCAGTGGCTGTCCACCATTTCCCAGTACAGTCGCAAGATCAAGCACTGGAACCGCTTCAGAGATgaTGATTACATCAGATCATGGGATGAAAATCAAGGCTCAAATGAAAATGTCGACACAACTAAAGATCCCTGCCAGAAGGTGAAGTGCAGCCGACATAAAGTGTGTGTTGCTCAAGGCTACCAGCGCGCCGTGTGTGTCAATCGCAAGAAGCTGGAGCACAGGTTGAAGCAGCAGGTCATCAGACAGCAGCAGGAGAGTAACTGTAAGCCTTGTCCAGTGTCGTCCTCTGGTCCAGTTTGCGGCTCTGATGGACACAACTACGCCTCTCAGTGTAAACTGGAGCAGCAGGCTTGTCTCGCAGGAAAGGAGCTGAAAGTGAGATGTCCTGGTCTTTGTCCTTGTACCGCCACCACGGCTCCTGCTACAGACGTGGACGGCAAACATGAGAGTTGCACAGGACAGGACCTGGCAGATCTGGGCGATCGCCTGCGGGATTGGTTTCAACTGCTCCAAGGCAACGGCAAGCAGAACAGCACAGGCAGTCCTGCAGCCAGTTCTGCATCAATTGTGGACCGGACTCTTGTTGCGACCTGTAAGGACTCTATTGGCTGGATGTTCTCCAAGCTGGACACGAACAGTGACCTGTATCTGGATCAAGCTGAACTGGCTGCCATTAATCTGGACAAGTATGAAGTGTGTATACGGCCCTTCTTCAACTCCTGTGACTCTTACCGCGATGGCAAAGTGTCCACAGCTGAGTGGTGCCTCTGCTTTTGGAGAGAAAaGCCTCCCTGCCTGGCTGAGCTCGAGCGAATCCAACTGCAAGAAGGAGCCAAGAAGAAGTCGGATGAGGTGGTCACATACTCTGGAGATTTTGGCAGCGGCCTGGGATGGGAAGATGAGGAGGAGAAGGAGGCTGAGGAAAACGGCGAAGAGGCcgaggaggaagaaggggaggtgGGAGAGGTAGATGATGGTGGATACATCTGGTAG
>TCONS_00011958
GCGCGCACTCGCTGACAAACCTGATAGCAGCAGCAGCTCTCAGCGTCTTCatcgcctctctctctctctctctctctctctctctctctctctctctctctccctctacaGAGGGAAGACGCATCCTGTAATCAGGTCACACTTCACTGTAGTCTCAGCATCATCCGTCTCTCGCATTTTAAAGCAGAGGAATCGAGTCACCGGACCCGCGGAATAATGGTGTGGATGAATAATCCGGGATGTGTTCTCGTCCCGCTGCTGATGCTCGTGCGTGTGGCCATGCAGGTGGACGTTAAGAGCGGGAAAGAAGCGGAGAAAACGGGGAATTTCATGGAAGATGAGCAGTGGCTGTCCACCATTTCCCAGTACAGTCGCAAGATCAAGCACTGGAACCGCTTCAGAGATgaTGATTACATCAGATCATGGGATGAAAATCAAGGCTCAAATGAAAATGTCGACACAACTAAAGATCCCTGCCAGAAGGTGAAGTGCAGCCGACATAAAGTGTGTGTTGCTCAAGGCTACCAGCGCGCCGTGTGTGTCAATCGCAAGAAGCTGGAGCACAGGTTGAAGCAGCAGGTCATCAGACAGCAGCAGGAGAGTAACTGTAAGCCTTGTCCAGTGTCGTCCTCTGGTCCAGTTTGCGGCTCTGATGGACACAACTACGCCTCTCAGTGTAAACTGGAGCAGCAGGCTTGTCTCGCAGGAAAGGAGCTGAAAGTGAGATGTCCTGGTCTTTGTCCTTGTACCGCCACCACGGCTCCTGCTACAGACGTGGACGGCAAACATGAGAGTTGCACAGGACAGGACCTGGCAGATCTGGGCGATCGCCTGCGGGATTGGTTTCAACTGCTCCAAGGCAACGGCAAGCAGAACAGCACAGGCAGTCCTGCAGCCAGTTCTGCATCAATTGTGGACCGGACTCTTGTTGCGACCTGTAAGGACTCTATTGGCTGGATGTTCTCCAAGCTGGACACGAACAGTGACCTGTATCTGGATCAAGCTGAACTGGCTGCCATTAATCTGGACAAGTATGAAGTGTGTATACGGCCCTTCTTCAACTCCTGTGACTCTTACCGCGATGGCAAAGTGTCCACAGCTGAGTGGTGCCTCTGCTTTTGGAGAGAAAaGCCTCCCTGCCTGGCTGAGCTCGAGCGAATCCAACTGCAAGAAGGAGCCAAGAAGAAGTCGGATACATACATTCCCAGCTGTGATGAGGACGGCTTTTACAGGAGACTGCAGTGTGACAAGAGCAGAGGGGAGTGTTGGTGTGTGGACCAGCATGGAGGAGAGCTAATGGGCTCCAGAATCCATGGCAACCCCGACTGTGATGAGGTGGTCACATACTCTGGAGATTTTGGCAGCGGCCTGGGATGGGAAGATGAGGAGGAGAAGGAGGCTGAGGAAAACGGCGAAGAGGCcgaggaggaagaaggggaggtgGGAGAGGTAGATGATGGTGGATACATCTGGTAGAAGGAAACACGATTCCCGCCTTGTTCGACGTAGCTTTCTGTGGCCCATTTCTACAGAGGCAGCTCTATCTTCTGACATTAAATGGTGGAGGGTCGGTCATCTTTATACTGCACTCCAAACAGCATTGACTCGGGGAGGGAGGGGGGAAGGGCAGCTCAGTTAGTATTAGCTGTAGTGAGATAACGGTTTTGGGAACGAGTTTTCAATTATTGGGCTTATGAATACTTGTGAAACATCATAATTTTTGTTGTAAGTGCAAGAGTTTTCTCTTGAATCAGTCTCTAGCATCTGCAAACACAAGCTCAGAATTAGGCGCTTGATAGGTGTGATGTGATGCGTTCTTTCTTATGCAAGTCTAATAAATACATACTCTCATCACTATACATTCGGAAATGATACCTGTTAAGTCTAACTTTTTAAAGTATGTATATAAAGGTAGACAGGCTTCAGGGTCTAACCTGTTTCATTAGATATTTTGTCGACCATCAGCAACTGCTTTCCATGAGCAATGAGACTGCTGCTAAATGTTTTTGCTGTTAAAGTTtatgtaaattgttttaaaagtgtCCTATAAATGGTTAAGCTTATACAAACTCGGATTATAAGAGAGACAAAGAGACACAAATTCCAAAAACTAGCCTGGTTAGCTTAGCTAAGTTTGCTAAAAGTTGTTTAACTTAGCTAATGCTACGCTACAAGAGAAAAATTCTTTAAACTAGCTGAATTAGCTTAGCTGAATTTGCTAGCCTTTACAAAAAAAGATATAAACTACACAAAAACAACTTAGCCAAGTTAGCTtagctaaa
>TCONS_00011959
ATTTTAAAGCAGAGGAATCGAGTCACCGGACCCGCGGAATAATGGTGTGGATGAATAATCCGGGATGTGTTCTCGTCCCGCTGCTGATGCTCGTGCGTGTGGCCATGCAGGTGGACGTTAAGAGCGGGAAAGAAGCGGAGAAAACGGGGAATTTCATGGAAGATGAGCAGTGGCTGTCCACCATTTCCCAGTACAGTCGCAAGATCAAGCACTGGAACCGCTTCAGAGATgaTGATTACATCAGATCATGGGATGAAAATCAAGGCTCAAATGAAA
>TCONS_00011960
ATTTTAAAGCAGAGGAATCGAGTCACCGGACCCGCGGAATAATGGTGTGGATGAATAATCCGGGATGTGTTCTCGTCCCGCTGCTGATGCTCGTGCGTGTGGCCATGCAGGTGGACGTTAAGAGCGGGAAAGAAGCGGAGAAAACGGGGAATTTCATGGAAGATGAGCAGTGGCTGTCCACCATTTCCCAGTACAGTCGCAAGATCAAGCACTGGAACCGCTTCAGAGATGAAGTGGAGgaTGATTACATCAGATCATGGGATGAAAATCAAGGCTCAAATGAAAATGTCGACACAACTAAAGATCCCTGCCAGAAGGTGAAGTGCAGCCGACATAAAGTGTGTGTTGCTCAAGGCTACCAGCGCGCCGTGTGTGTCAATCGCAAGAAGCTGGAGCACAGGTTGAAGCAGCAGGTCATCAGACAGCAGCAGGAGAGTAACTGTAAGCCTTGTCCAGTGTCGTCCTCTGGTCCAGTTTGCGGCTCTGATGGACACAACTACGCCTCTCAGTGTAAACTGGAGCAGCAGGCTTGTCTCGCAGGAAAGGAGCTGAAAGTGAGATGTCCTGGTCTTTGTCCTTGTACCGCCACCACGGCTCCTGCTACAGACGTGGACGGCAAACATGGTACAAGAGTTGCACAGGACAGGACCTGGCAGATCTGGGCGATCGCCTGCGGGATTGGTTTCAACTGCTCCAAGGCAACGGCAAGCAGAACAGCACAGGCAGTCCTGCAGCCAGTTCTGCATCAATTGTGGACCGGACTCTTGTTGCGACCTGTAAGGACTCTATTGGCTGGATGTTCTCCAAGCTGGACACGAACAGTGACCTGTATCTGGATCAAGCTGAACTGGCTGCCATTAATCTGGACAAGTATGAAGTGTGTATACGGCCCTTCTTCAACTCCTGTGACTCTTACCGCGATGGCAAAGTGTCCACAGCTGAGTGGTGCCTCTGCTTTTGGAGAGAAAaGCCTCCCTGCCTGGCTGAGCTCGAGCGAATCCAACTGCAAGAAGGAGCCAAGAAGAAGTCGGATACATACATTCCCAGCTGTGATGAGGACGGCTTTTACAGGAGACTGCAGTGTGACAAGAGCAGAGGGGAGTGTTGGTGTGTGGACCAGCATGGAGGAGAGCTAATGGGCTCCAGAATCCATGGCAACCCCGACTGTGATGAGGTGGTCACATACTCTGGAGATTTTGGCAGCGGCCTGGGATGGGAAGATGAGGAGGAGAAGGAGGCTGAGGAAAACGGCGAAGAGGCcgaggaggaagaaggggaggtgGGAGAGGTAGATGATGGTGGATACATCTGGTAGAAGGAAACACGATTCCCGCCTTGTTCGACGTAGCTTTCTGTGGCCCATTTCTACAGAGGCAGCTCTATCTTCTGACATTAAATGGTGGAGGGTCGGTCATCTTTATACTGCACTCCAAACAGCATTGACTCGGGGAGGGAGGGGGGAAGGGCAGCTCAGTTAGTATTAGCTGTAGTGAGATAACGGTTTTGGGAACGAGTTTTCAATTATTGGGCTTATGAATACTTGTGAAACATCATAATTTTTGTTGTAAGTGCAAGAGTTTTCTCTTGAATCAGTCTCTAGCATCTGCAAACACAAGCTCAGAATTAGGCGCTTGATAGGTGTGATGTGATGCGTTCTTTCTTATGCAAGTCTAATAAATACATACTCTCATCACTATACATTCG

Function

symbol description
spock2 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Is expressed in brain and peripheral olfactory organ. Orthologous to human SPOCK2 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-170 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Is expressed in brain and peripheral olfactory organ. Orthologous to human SPOCK2 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2).

Ensembl:

ensembl_id ENSDARG00000075393

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011957 False 1338 mRNA 0.53 9 30054996 30131450
TCONS_00011958 False 2282 mRNA 0.48 10 30054996 30132256
TCONS_00011959 False 276 mRNA 0.49 2 30055171 30083381
TCONS_00011960 True 1704 mRNA 0.51 11 30055171 30131839

Neighbor

gene id symbol gene type direction distance location
XLOC_006058 dnajb12a coding upstream 8243 30035253 ~ 30046753 (+)
XLOC_006057 cuedc2 coding upstream 118737 29925397 ~ 29936259 (+)
XLOC_006056 NA coding upstream 163176 29889189 ~ 29891820 (+)
XLOC_006055 pax2a coding upstream 249467 29770837 ~ 29805529 (+)
XLOC_006054 CT025909.2 coding upstream 299569 29755293 ~ 29755427 (+)
XLOC_006060 eif4ebp2 coding downstream 31259 30163515 ~ 30168897 (+)
XLOC_006061 pald1b coding downstream 36977 30169233 ~ 30214368 (+)
XLOC_006062 qrfpra coding downstream 83509 30215765 ~ 30235220 (+)
XLOC_006063 AL929330.1 coding downstream 119485 30251741 ~ 30251857 (+)
XLOC_006064 zmiz1a coding downstream 289216 30421472 ~ 30570859 (+)
XLOC_006053 CT025909.1 non-coding upstream 463881 29590994 ~ 29591115 (+)
XLOC_006049 NA non-coding upstream 605275 29446817 ~ 29449721 (+)
XLOC_006044 NA non-coding upstream 971705 29083087 ~ 29083291 (+)
XLOC_006065 AL844152.1 non-coding downstream 379351 30511607 ~ 30511723 (+)
XLOC_006067 NA non-coding downstream 544569 30676825 ~ 30677643 (+)
XLOC_006071 CR762493.1 non-coding downstream 704400 30836656 ~ 30836776 (+)
XLOC_006074 NA non-coding downstream 788298 30920554 ~ 30928661 (+)

Expression


Co-expression Network