G76168


Basic Information

Item Value
gene id G76168
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 3891161 ~ 3894819 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU95095
GTGCTTCTGAACCATCAGGGGTAAGAATTTTACAGAATTTATGGTTATCTTTTAAATAGCTTCGGGGTGAGATTTGGTGAACCAACATAATATACTTCTAACAAATGTCGAAGGATGTATAATAGAATCCCTTCAAAACACCaatatgcaatattttacatatgtgAAGGCTTTCAGCTGTTCAACTGGGTCCACAAGAGGAACAGAGGAATATTACATTGCCATTGGCCTGATTATATTTGAGCACTGAAATGCTTCACTTGTATCTAAAAatcattaatcattttacaCTAAGAAAATAAGGAActtgtattacaaaataagGTGAATGCACAAATCAGAAGATTTTGGTTGtatccattttatttacaaGGAATTAAAGTCTCCCATTCTTCCATAAAAGAGTTCTGCAAGTTTGTCCATNNNNNNNNACCTGGTATGCATTACAGTGGGCATTAGAGCCTCATTTCTTCAAGAGCTGATGTCTGACCACAATGAAGGGGAATGTGAAACCACTGCCGAAGAAGAGGACCATCATGCCCAAAAGCCTCCATTTGTTCTCCACTGAGAAAGGAAGGTTCTTCCTGGTCCTTCTCCGTAATGAGAGCTGCGAATGGCGGAGGTAGTGAACCTGCGAACAGCCTGGCCCAACATGGCTGGTTTCTAAGATTTTTCTGCTTTTGGGTTTATTTCTCTCTTCACTCCACTGCACTGCCGGCGCGACCTTCTTTCTGAAAGAGACAGGAACAGCGAACGGACTTATGGGACAGCGCAATGCGCCAACTTCCGGGTGGAGGAGCGTAGCCTTATGGGAAGCGTAGTCTTC
>TU95097
aaaaaaaaaagatttgtaaatactcttaaaatatatagttcttTAAGGATAACACTCACCACCCCCCACATGTATATCAAAGGTCTGATTTACTATTCAATCCTGGATAGCAAACTAACACCCACTGATTAACTAGTCTAAAACTGGAATCCATGCCCCCTCCTCTACCAACTGTCGCTCATTTTGTCCTTTTATATGCATACTCAAGATAGATCTTTGATTTACCATGACTCTTCCCTATATACaatgttttctacattttgtcAAGTTCTTTGGCTAAAAGTCCTACATTAATTAAATCCTCAAAACacttatttctatatttaaaaacttatacatgtatatttgttatGTATAATACATTGCCTAAACTGTAATACATTACTGTGCCAATACATCAttataaaaaagcaattaaacctGCAAATGCTTGCCAAACTCAGTTGTACCACTCACAAAATTACTTCATTTGGTAATGCACACCCAAACAGGCTGATGAATTTCAAACGAGCCCAATCACAATATAGCTCCCAATAATCAAATATACCTGGTATGCATTACAGTGGGCATTAGAGCCTCATTTCTTCAAGAGCTGATGTCTGACCACAATGAAGGGGAATGTGAAACCACTGCCGAAGAAGAGGACCATCATGCCCAAAAGCCTCCATTTGTTCTCCACTGAGAAAGGAAGGTTCTGAGGAAACTTTCCTGGTCCTTCTCCGTAATGAGAGCTGCGAATGGCGGAGGTAGTGAACCTGCGAACAGCCTGGCCCAACATGGCTGGTTTCTAAGATTTTTCTGCTTTTGGGTTTATTTCTCTCTTCACTCCACTGCACTGCCGGCGCGACCTTCTTTCTGAAAGAGACAGGAACAGCGAACGGACTTATGGGACAGCGCAATGCGCCAACTTCCGGGTGGAGGAGCGTAGCCTTATGGGAAGCGTAGTCTTC

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:0045333 cellular respiration biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU95095 False 826 lncRNA 0.41 3 3891161 3894819
TU95097 True 950 lncRNA 0.40 2 3892584 3894819

Neighbor

gene id symbol gene type direction distance location
AMCG00009881 NA coding upstream 154516 3728279 ~ 3736645 (+)
AMCG00009880 LOC106585770 coding upstream 231924 3628889 ~ 3659237 (+)
AMCG00009879 NA coding upstream 378830 3494369 ~ 3512331 (+)
AMCG00009878 NA coding upstream 408565 3481976 ~ 3482596 (+)
AMCG00009871 cetn3,LOC106563079 coding upstream 743667 3141929 ~ 3147494 (+)
AMCG00009885 NA coding downstream 422219 4317038 ~ 4317867 (+)
AMCG00009890 NA coding downstream 451845 4346664 ~ 4471973 (+)
AMCG00009889 NA coding downstream 580473 4475292 ~ 4476458 (+)
AMCG00009891 NA coding downstream 582802 4477621 ~ 4478723 (+)
AMCG00009888 hapln1b,LOC107758638,LOC108425247,LOC107741669,LOC107602078,LOC107658619 coding downstream 804863 4699682 ~ 4716944 (+)
G76163 NA non-coding upstream 94153 3796551 ~ 3797008 (+)
G76105 NA non-coding upstream 287556 3538497 ~ 3603605 (+)
G76077 NA non-coding upstream 470335 3420612 ~ 3420826 (+)
G76054 NA non-coding upstream 751268 3138953 ~ 3139893 (+)
G76052 NA non-coding upstream 761458 3129165 ~ 3129703 (+)
G76186 NA non-coding downstream 358418 4253237 ~ 4253554 (+)
G76266 NA non-coding downstream 1263569 5158388 ~ 5228786 (+)
G76346 NA non-coding downstream 1567704 5462523 ~ 5462811 (+)
G76408 NA non-coding downstream 1849438 5744257 ~ 5751212 (+)
G76417 NA non-coding downstream 1875436 5770255 ~ 5771092 (+)
AMCG00009863 NA other upstream 1122653 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 2468039 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 2522346 1360536 ~ 1368815 (+)
G75807 NA other upstream 2556111 1333967 ~ 1335050 (+)
AMCG00009844 NA other upstream 2563568 1322618 ~ 1327593 (+)
AMCG00009898 tmem167a other downstream 1016151 4910970 ~ 4920884 (+)
AMCG00009897 NA other downstream 1337813 5232632 ~ 5248181 (+)
AMCG00009915 NA other downstream 1871518 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 2164423 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 3147778 7042597 ~ 7062734 (+)

Expression


Co-expression Network