G76408


Basic Information

Item Value
gene id G76408
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5744257 ~ 5751212 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU95410
TTCCAGTCCAGAAAGGGCAGTGCCTCCAGCTCTCATTCTCTCGGGCAAGGAAGAGCCAGGGGATGCTCGGCCTGGAGAGACACGCCCATTCCTGCGGGGGCAGCCAAAAGGGTGGAATGGGCTTCCTcctgtttttccttcttctgttcttctgtgtTGGCTTTTAAGGCCTCCAGAAGGGATGTGTTTGCTGGTGGCTGGGTGGTGCTGGCACTGAGCCCCCTACCTCTTACAATGGCCTGTTAACGACACATGCCCCCATGTGGAGGCCGCAGTCACCCTTACACACGCTGCAGGCACAGCTGACAGACCCCACTGAGCGGCCCCTGAATGCAAAAGTGAAACCGCACTATTCTGGACACATTGGCTTGTAATTCAGGACAATAAACACACAGCCCTACATGAGTAAACCGAGCACCCTTTGATGTAGCAGTAATAATCAAggcaaaacaccaagcacaaaacggAGAAGGCACATGCACAGTACTGTCCGGCCGAGCCTAACACTGTGTTGTGGGAGTACAATGTGGCCCCGCTGTGTCGAGTGAATTGCTGTCTTTTACTCTGCCAGGCCTCTGTAGAACTGGGTTATGATGCTCAGCGCTATTGCGGAGTCCTTAGATCCTCCTGGactgtcaatttattttattattttggactTTACAGAGGGGaacccctcacacacacacacacacacacacacacacacacacacacacaactcctgGGACTTCCTGCAGACACGGACACCCAAGGACTCCCGAGGTCTCTTgcgactttttttgttttcttgttttgtttccgGTTCTCttctttctgttgctgttgGTTTTCTCTTCAAGACTGTTATTGTACAGCaacagggaagaaaacaaaacagaaacactcGAGGTCGCTTCAATGATGCCTTTGTTCCCAGAGAGGaagacacggagagagagaagtgatgTGATAGGACAACAGTGTATTCTTCTCTTATCTGGGAACCTACTgactgacaaacaaacacacataatagGTGTCAGGGAAGACAAAATAGACTAAAAGTAGACTAAACAGGCTTTGAGTTCTGAGAGAGGACCCTCCGGCTCTGCCCGCCTGTCCATGGCAATTTTTTTCAGCTCTTTTTGACTGTTTGTGGTGGAGGAGGCGGTTGGTGAAAGTTACCAGTGTTTAATGGGATGATCCAGTTCCTGTTTCTCAAACGCAGCCTCAGAGAAAGCACTGCCACCCCTCCTTCTGCAcatgtttttcactttcattttcttcactttttctctttctagATTTCTCAGTCTTCCTCCAGGTTTTTGTATGTAAACTCAGTAGAAGACCGTGTACAcgtttattattacaaatttatttttctgatttccTCTCCGTTGTTCTTCATAtgtcctgtttttttaaccaaaaacaaaactgtgaatATTCGTTCAGTTTGAGGTGACTCCCCAGTCACCCCCGTCCCTTACTCTCCATCTTTCTGGGATGGAGAGTGAGAGCACAAGAGAGAACTAGACGAGTGAATGGTGTTAGAGAGAAGGCCGTTCAGACAGAGGTTATCTATGATTTGTAGAGACAAACAATGACCACAGTTGTTATAGTGTAAATCTATTAAGCTGGTGGACTTCCGTGTCCCTGAGGCACATCTACGTGTGTTGTTTGACATGGATGCTATGATTGGTTGAAGTTCAGTGTTTCCTGTGGGCtcctttaaaaatcacatttactgCTAGTCACTCTCTGATGTTCCGTTTGATTCCCGTTCTTCAGATTAAGAGAAAGAGATTGTAAAGTGAGTTGTATTCATTGATTTAGGGATTGGGAGTGGGAGTGGCCAGCCCTGGTATTGATGTACACGGGGGGGATGTAACTGTGACTGCATTATTGGTCTTCATTGAGCCCCAAccccaagaaaacaaacaggctcTGTAGCGGCGTCCAATACGGACCAGGTCAGCAGGGCTGCTGCCTCAGAGACCAGTGAGTCACGGACAGGCGAGAGAGGAGGTACGTGAGCAGAGCGCCAGAGCAGAGTGACCAGGGCTGTGGGGGGAGTGTCAGTGTAGAGGTCCTGGGGAGAGGGGGGCCATCGCTCTTTGAACTCGGCATCAGTGAGCACATACCACCCACCCACCCAGTAGCATTAAGTGATAAACCGACACGGAGGACGTGGGAGAGCCAGTGTGCCCCCCAGGTGTGCCTGCTTGTATCTCCCTCTTCAATGCACAGTcaagtgtagtaaagcacagtgaaattGACGTAAGTGTGGCGAAAGTGCAGAGACGACGGTTAAAGCACGGAACAAAACTGACGGGCTCCACCATACCTGCCGAATGAGGCGTTTGGAGATAGACTTTGGGCTTTATTGAtttcctgcttttgttttcactttagaGGTGtgacttttctctctctctctctctctctctcatggtaTTGCctttggtggtggtggcagtgtgtgtggttGGGGGGAATGGAAGCAGCTGTTTAGAGGTGTTGAAACTGCGCTTGCAGAAAGAGCTATATGGGTTTGACTTGGGGAACTGATTGCATGTGTCCATCTAATTTGCACTAAGCTCCCTCCTGCTCCCGGTGTGGCTGTGGCCCCTGTGTTGGAGGAGATGCAAGAGATGTCTTGAGAGATACAGGGGCCCCAGCTGGCATTCCTCCCAGTAGAGAGTCAGTCTTGGTGTAGCGTTGGCACACTTGCTGGTCAACAGATGAAACCGGATTTATTTGTACCTTTTATGAGAGGGGGGGCAATGAATGCCTAATTCTCTCACTAACAGCAGAGAATGTGCAACCTTCCATTTAAATATAAGTGAAAGGTAGAGGAACATCGACagagtgatatatatatatatatatatatatatatatatatatatatataagttctGTGTCAGCTTCCTGTGCTTAACAGAGATCTTcatatatagttaatttaaacTATAATCCTAATTTTCATTTAAGCTATACAGACAAATTGGAAATTGTTTTTCACAGTGTACAGTAGCAAATGGAGAAGGTCTTTAATACCTGCCCAGTATTCTTTGCCTTGATGGTGCAGATTAATACTGATGTGCACTTGTCTGCAGAGGGACTGTTTTCATGCGCAGTATTAACTGGAGAGGAGGATGATGGATCTATTGAAGTGGCGTACGGTATTGAGTCACAGGGCGTACTGATCTCCTTATTCTTCATCGATGCCTATTGACGAGTCTTCCAGGGTCTTGGCTCCGGCCAGTTCCTTAATGCACTCACTGAGCACGGTCTGCCTGCGGGGCGTTTAGGGCAGAATCCAGCCCTCTTTCTCTTGTGTCGGAGATGCAAATGGAGAGAGTGTGGGAGTCAGGGGACAGTGGGCGCTGGCATAGGGGTTTTCTGTACAGATGTAATGCAGGgtttttcctattattattattattattattattattatttgtttttacgtGTAGCTAAATAAGTCTCTTGCTCAGCTGCAAAGATGGACCGATGCCTTCCTGGAGCTGAGCAGACACCTGATTGCACGCACGAGTGTTGTAAAATTTCAACGTGTAccatacccccccaccctccaccctcCACACCATCCCCCAGCTCTGGCGTTTGCTGTGCCTTCTCACACTTTGTTGCCCATCTCTTCTGTAGCCTTGCCCATGTGTAGGTGTTGGCATCCGTCACTGGGCTTCCACCGGTCACCTGACTCACCCAGTGCGTGTGATGCTTGTTCGGCAGGGCTTGTACCCCCAGAGTAGCagtgacgtgtgtgtgtgtttatttgatgcTGCTTTACTGTCGTATGCTTCACTGTCACAATGTGAGCTCACCGGCTGTGTCCTCTCACCGCGGCAGTGCTGCTGGCCTCCGTCTGGTCAGGGCTGCCGCTGTGGTAAAACGCCCTCTCAGCGCAGTGCCATCGCTGGGCACACATACAGGTTTACAAAGCTGGTGAGTCTTGAAATGCAGAAATTAGTACGATTTGATTAAAGAGCAGTTTGCAAACCCACTGGAGAATCATCCTACCTTCAGTTTGGTGTCAGTTTACTACATTTGTGGTCTAGttcctctttatttatttattatgatttaaacgCATGCTTCAGCTTGTCAGAACGTTTCAaattcatttcatttctgttgaaaaactaaaaacagatcaATGTGAACGGCATTACCAGAATTGGTATAGAAAGATTCCGCAAATAACTGACTGACATGAGTGTGGAAATGTGTGTTGATGTTTTGGAAAAGCATGCAAAGTCTCCTGTAGTGCTCGGCGTTAGCAAAACTGTCAGAACTTCCCGATGAGAGTTCTACCTCGTATGCTGACTTGCACACAGTACCTAGTGATGAAGACCTTCCTTTGTGATGTTGCTGGTGTTCTTGCCATTTGGAccaacatttaaaagtgtttattcTTAGTGTTAAAAGACTGAGATTTAATGACCAGTAAGCTGGATATCAAACTTCAAATTAGCCcataaaataatgtgtgcaTTTACAAACCAGGGGACTGGACATGCTGCAGTGTACAGCCTAGACAAGAGTGAGCTTTCATTCTTGAACCTCAGCACTAATCACTAGAcctaaaaaagacaaacaatcaTATGTAATTTTAACTGCACACCTTTGTAAACAGTATTGTAGACATGGTGTTTTTGTAGTTTGTCAAGACGACCCGGCCCTGGCACAGGAACATGGTTCAAACCCACGGGCAGAGAGTTTTTTCTGCAGTAGTTTCTCGCATCGGCCTCTGTAATAAACTCGCCCCCAAACAGCAAGGGCACAATCACGTTCACACGTCTCCCAGTGTAACCAGCTCCCTGGTAGCTTAGTCCTATACTGTGTCTGTTGTACTGCTTATGAAACCCCCATTTCAGTAGTGCTGTAGATCTGCCTTCTCACTGGGGGGTCCGAGCCCGATCCCCATTCACACTGCCTTCGATATTAAGCTAAGGATGCTGCATACAATTCCAGTGGTTCTTTTGCACTGGGAATAAATACTTAACCAGTGAACCGCGCTGTTTATACCTACGTATGGCTCTAATTAATTGCACTAAGCTAGTTACACCAGCTGCCTGATCAGTCACACACCATTTTAATGTGTTGGCCCCTCTCCTGGCTGTCTGTGTTCACTGTACTCGGCAGTGTAGATTTGCAACCCAACCGAATGGCAATTTTTCAACCtcaaaacaattttatttgaataaaccAGGTTATAATTGGCAATTAATAATACTGCTTGGCAACAGATTCCTAATAAATTAGTCCGAGCCGAGTGCAGAGTGCGTAAGCGGATTTGGAAGTTTTGGATTCACAGGATCCCTGTTTTGAAAACCTGTTTTGACACTGCGCTAAAAAATTGGCCAATGTGCAAATACACACTCCCAGCCTGCAGAGACCCCCCCTCACAGCCAGGACAGGGGCCCCCATCTTTAACCCAGAGGGGCTCTTTTCTCTTCAACTGATGTGACTATTAAGGACTTTTGCACTCCCCCCCCCAGTTATTCAAACTTAATCCTATTGAGCTTCTTTTTGTGGACTTTGAAATAGTGACAATGACCTaacaggaaaaaactaaaatgaaaaaaacactttaagggcttttttttataataaaatgaaaagatcagaatgttttgctgctgttgcgcaaaaaaaggacaaaaaataaaataaaagaaatcctttgtaatatttttcaaCCACTGTGATTtgtacaaaaaggaaaaaaaggtagttttttttttttttttttttgccgttTAAGTATTTCAATGTTTGACTTGACTTTTAATAAAACCTTGCTAAAGTCTTTGATCCGGCTGTGTCTGGGTTttcatttctataaaaaaaaatcactcca

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95410 True 5878 lncRNA 0.45 3 5744257 5751212

Neighbor

gene id symbol gene type direction distance location
AMCG00009916 LOC103362416,LOC106953753 coding upstream 115 5717698 ~ 5744142 (+)
AMCG00009914 NA coding upstream 141274 5595438 ~ 5602983 (+)
AMCG00009911 NA coding upstream 150250 5562975 ~ 5594007 (+)
AMCG00009909 NA coding upstream 218695 5509084 ~ 5525562 (+)
AMCG00009905 NA coding upstream 284373 5458286 ~ 5459884 (+)
AMCG00009919 NA coding downstream 35213 5786425 ~ 5794926 (+)
AMCG00009923 ube2r2 coding downstream 139068 5890280 ~ 5894977 (+)
AMCG00009922 NA coding downstream 181809 5933021 ~ 5940090 (+)
AMCG00009926 NA coding downstream 235055 5986267 ~ 5998592 (+)
AMCG00009930 NA coding downstream 361084 6112296 ~ 6149391 (+)
G76346 NA non-coding upstream 281446 5462523 ~ 5462811 (+)
G76266 NA non-coding upstream 515471 5158388 ~ 5228786 (+)
G76186 NA non-coding upstream 1490703 4253237 ~ 4253554 (+)
G76168 NA non-coding upstream 1849438 3891161 ~ 3894819 (+)
G76163 NA non-coding upstream 1947249 3796551 ~ 3797008 (+)
G76417 NA non-coding downstream 19043 5770255 ~ 5771092 (+)
G76418 NA non-coding downstream 20462 5771674 ~ 5771949 (+)
G76434 NA non-coding downstream 24744 5775956 ~ 5776174 (+)
G76460 NA non-coding downstream 146098 5897310 ~ 5900982 (+)
G76484 NA non-coding downstream 194494 5945706 ~ 5946053 (+)
AMCG00009897 NA other upstream 496076 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 823373 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 2975749 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 4321135 1409180 ~ 1423122 (+)
AMCG00009851 NA other upstream 4375442 1360536 ~ 1368815 (+)
AMCG00009915 NA other downstream 15125 5766337 ~ 5769052 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 308030 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1291385 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4551714 10302926 ~ 10313486 (+)
G77423 NA other downstream 5398414 11149626 ~ 11155469 (+)

Expression


Co-expression Network