G76460


Basic Information

Item Value
gene id G76460
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5897310 ~ 5900982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU95468
TTGGCTGTCAATGTGTGTGAATACAGTGTCAGACTGCTTTAatgtccccccccacctcccactaAGCATTCACCTGCCCAACATACATacgcacacatacatgcactGGGCCaccacgcacatacacacacacacactcctgaaCTGAAGTGCAGCTGgtgtgtgtctctccctctttctttccctctccctccccctccccctccccctctttccctctctctctgctttttacAGAGTGGGAGGGGATGTGGTTTGCAGGTGTGGGGACATTCAGGAAACCCTGGATTCCCCCCAACTTCCGAGCCAGCCCAGGGAGCATGGCTGCATGTCTGGGATTATTTCTCTCATTTAGGTGGATGGATGGGCTTTTTTTTGCCCCAGCAAGAGCAGTGGGTAGTGTGGTCTGGACGACCTTCTGCTGGGCTCACCTCCGAGGGAACTTTAAGGTGAAGGACAAGGAATGATAAATTGCAgtcaagcaagcaagcaagtaAACACAGACAGACGAGCTCAAGCAGGACTGCGAATGTGAGGGGAAACGTGCCGTGTTGGCCTGGGTTTCAGTGCTGGAGGGGACTGGCTGATTTGGCCTTTGGGATCAAGGCTTTCACAGCTGGGCTACACACAGGCAGAGGAAATGTCCTGGTTGTGTTAGTAGGACTCGTTCAGCAAGGCAGGAAAACCCCTTTCTGGGCCCTTCTCCTTCGCCTGGCCACAGTGCATCAGTGTGGATTCTGTGTAGGCCACCTCGCTGCAGGTTTGAGCTCACTGACATGACTCCAGCAGCATGGGACAACAGAGAGACCCTGGACAGCTGGGACCGAATCTTGTGCTGAGATTTGCTTGATTACTTAAACACGATTGCGGCTTAATTTCAGCTTTCTGAAAccaaggaggaggaggatttGAGGGGGGGGGACCTCAAAACAACCCCTTATGTCTTCACAGAAATGAGAGAGTggagacgtgtgtgtgtgtgtgggggggtgttctGTAGGTGGGCAATTTTTTggatcacaaaagaaaaaaactaaatattttggaTCTGCTTTTATGTTAAGTGTCTTATCATTCATAACCCAAACCAGGAGCAACGTCAACTAGACTTACCAGACTGAGCCTCTTCTACTTATTCTGGGGATGGATTGAGAAGATTGAGAAACAGCAGCCATAAAGAGCCGTGCACTGTTTAAACCCCCCAGAATGCAGAGTGAGGTGTCAGGCTGGTGGAAGCTGGGTTCTGCAGGTGTGATGTAATCAGTATAGGTGTGAGCAAGACTGGGGCAATGCCACATCCCTCAGAAATGaaaagaggtgtgtgtgtgtagtgaccAGAGGAAAGGTTGGCCCATTAACtttggtaataaataaataaataaatagtgaCCCCCccataaaagtgtttttttttggtttgtattttgctcGCTTCTCATACTTTCCGTGCCTGGAAGGAACCATCAGGGCTGATCACACAGATACTCCAGGTTGGCCAAAAGTTAACCGCTCCCTCCTCTGAGTCGTGGTGTTACAGCTCACTGAGGCTGTCACCGCACTGTTTGTATACAATCTGgagattgtaaaaaaaaaaaaagaatacttaAAAAGTGGGGATTCGAGGAGTTGTCTTAGGATCCAAAGAATGTTTGTGCTGTGCAATTTGATCAACgattataatcttaaaatgctTTAGCAGAGGACTCTGGCTCCTTATCTGAGAGGCAGCCTTGGGAGGCTTCAGAATGAGGATGGAAACTAACCTGATATTTTACCCAGCCATTTGAAAGACgaactgtgtgtgcgtgtcattTTTGGGCCAGCTTGCAGTTATTTGATAGAATCAGTCAAACAAATAACCATTTTCAGGAGTTATAGTAAAGTGACTCTCTATGTATGGTGATGTACTGGGTTATAAACTTATTATTAGATATTCTTAAGTAAAACATTGTTCCCCGTGTTTAATAGGAAAGCATCACTGCCTTTCCTAAATTTCCCAATGGACTGGACAAGTCAACTCACCCTTCCATTAGATTTGAACTAAAAAGTATTAAGAAAATAgactaaaaattaaaaaaaaaaaaaaatctcccacagagagatgcagatcccacagagagatgcatctgctACAAAATACCAAGCACTAAATGGAGCAGACTAACACTTTTCCATCACATAGCTTGGCCAGTTACAGAGTGCTAGGCCTTGTgtagagtggaaaaaaaaattcaatttgTTTCTGGGTGCTCATTTAAATATAGATAAACTCTTTATTGGCTTGTAATTAGCTTAAAAATGTACTGCATTGATTGACACCTGTCTGATATGGAAGTCAGGGGAGCAGAGGTGTTTGGGGCTGTGGACGCACTGCTGGGCACCCTGGGGGTCACCTCCTCAGTGGGGGGGGAGGGATACTGCATCAGGGTGTGCCTTTTGGGAAAGTGAATCCAGACCATGTTGCTTATGTCACCTTTTTTGCTCCACAGCACTTGTGTGTATTAATGACAGAATTGTCAGTTGTCGCATGTTTGAACTCATCCTTGTGCCACAGTTGCCTCGCAGTGTGCCACATCTGTGGGTGTTTTTCCTCCTTCTACTCTTAGAGTTGAAGGAGTAATGGGCAGAGTCAGTGTCTTCACCCCGCGGTCCACAGAGAAGCCACAATGGGACGATGCTTTGGAAGAAAAAGGCTTCCTCCAGTTGCCAGTGCCCCAGTGACTGAGGCTACCCGGTGTTGTCATTGCTGCAATCCTGCATTTGAGCCACTGCTTCACTGAAACTGCTCTGTGGAAGAACCCAGGCCGCTCTTACTGCTTGGGCCCCTCATCCATTTGTAGCTCCCGGTTTCCTTTTCAACACGTGAAGTCCATGTCCAGACTGCTGCCCCAGGCACTGAAGCTGAAGGCCCTGTGACTGTCGCCACCCAGTCTGGCCACAGCTATCTGGCTTCTCCTGACATGAGGGGATGCCCATGGAGCTGTGGGGCCCTGGAGGAAGGAGCTCAAGCCCCAGTGATCCCTGCATGGCTTCCATGGGGGGCAGACCTTCTGATAGAATGGGAGAGAGGAGGCCAGCCCTAACTACCCCTTGGTCTCCTGCCGAGACTGGCAGCCCCTGCAGAGCAAGGACGCCGAGCCACAATGCCCCTGCAAGACTCGCATCTTCAGAATGAGCGTACAGTGGACCAGTGCAGTGTGGTAAACCCAGGGGAATATTTTTctcccttctcttctctctgcTATGCTTGACCATCTTTCTTCATACACCTCCTCATCTCATTGGGTGGAGGGGAACGCAATCACTGAGATGACTtgttataaaagaaaatgacaaagcGAGGAATTTGAAGTAGCAAAGATACTGAAAATAGAGGGCTCGAACTGCCGACTGCAAACAGAAAGATCGCTAAATAAAGGAAGCCCCTCCTGAAAATGCCACATTTTACAGGTTTCTTAATAAGTGTGTCTTGACTTGAAATTCCaccacttttatgttttacttttttttttttttgtccctggTTGGTATAGTTTCTCTTCtgcattcccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95468 True 3554 lncRNA 0.47 2 5897310 5900982

Neighbor

gene id symbol gene type direction distance location
AMCG00009923 ube2r2 coding upstream 2333 5890280 ~ 5894977 (+)
AMCG00009919 NA coding upstream 102384 5786425 ~ 5794926 (+)
AMCG00009916 LOC103362416,LOC106953753 coding upstream 153168 5717698 ~ 5744142 (+)
AMCG00009914 NA coding upstream 294327 5595438 ~ 5602983 (+)
AMCG00009911 NA coding upstream 303303 5562975 ~ 5594007 (+)
AMCG00009922 NA coding downstream 32039 5933021 ~ 5940090 (+)
AMCG00009926 NA coding downstream 85285 5986267 ~ 5998592 (+)
AMCG00009930 NA coding downstream 211314 6112296 ~ 6149391 (+)
AMCG00009928 NA coding downstream 249036 6150018 ~ 6154858 (+)
AMCG00009936 s100z,LOC107663035,LOC107720888 coding downstream 279421 6180403 ~ 6185389 (+)
G76434 NA non-coding upstream 121136 5775956 ~ 5776174 (+)
G76418 NA non-coding upstream 125361 5771674 ~ 5771949 (+)
G76417 NA non-coding upstream 126218 5770255 ~ 5771092 (+)
G76408 NA non-coding upstream 146098 5744257 ~ 5751212 (+)
G76346 NA non-coding upstream 434499 5462523 ~ 5462811 (+)
G76484 NA non-coding downstream 44724 5945706 ~ 5946053 (+)
G76486 NA non-coding downstream 46896 5947878 ~ 5950820 (+)
G76550 NA non-coding downstream 260474 6161456 ~ 6166615 (+)
G76555 NA non-coding downstream 266629 6167611 ~ 6168308 (+)
G76658 NA non-coding downstream 840950 6741932 ~ 6742239 (+)
AMCG00009915 NA other upstream 128258 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 649129 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 976426 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3128802 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 4474188 1409180 ~ 1423122 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 158260 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1141615 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4401944 10302926 ~ 10313486 (+)
G77423 NA other downstream 5248644 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5388921 11289903 ~ 11389245 (+)

Expression


Co-expression Network