G76486


Basic Information

Item Value
gene id G76486
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5947878 ~ 5950820 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU95496
ATTTAATTAGTTCTACACAGCCAAATGCATTAGATATGCCATACAATGCAATTGTACGAAGTTTGATGCCACTTCAGGTCCAAACTCACAGTTTCATGACATTGACTGAATTTAATTTCTAATGCTATTAATGTCATGGGCTGTTCATTTGCCTTGTAGGATTGTCTGAATAGGTGTTGGTTATGGTTTTGCTCAAAAACCTGAAGAGGTGTGAAAACAACCAGTATGCTGATGTCTGAAGCATTAAATGGTTGTGTGTGGGTGTAACTTGTCTTTGAATTGCAGTGTCTTCTGTGCTAGAAGATAGGTGGTGGTGAGCAGGTTAATGTGTGGGAAGGGAGGAGGTTCTGACTGAAGCTGCCCCACCTCGGCTCCTGGAACAAAGGACTTTGACTGCTTAACTGTCTTTGGAGAAGGGAAGGTCCTTTCACACGTCACTTAACCTACATTACTTGCTTAAGCAGTTGGTGCGCTGGATCACCAAAAGGCTTCAAATTAAACAACCTATAGAATTGCACTTGGATTGTGTAAGTTGGCTTACACTTAAGTTTATGTACTATAAAAGGCCAAACCAACTGCAAGTGTAAACTataaaaatgattacatttacataaatgcaTTAACAAGGCATTCTTAACTACCTCCATAAATCATAGGACCCGAATTAAAAGCTtcagtacaaaaataaagttttaaaaggTGAAAACTTAACTAGAGCATATTTCCCTACTTAAACTCATTCATTCATCTAGTCATCCCAGTCACATTTGCATTATGCTCTATACACATTCAACTGTAAAAGTACTTCACATTCTGTAAAATagtcagaaaaaagaaaatatgaaacactAGGAATGTTAAGGAAGAGAACACACAGTGTCGGTCTACTAGTTTTTAATACCCTtgaattttaaatactgtattcaaTTAGAGATAATATGGGAAAGACAAATTCgaaaaaatataatgttccCATTCGTAATCATAAAagttgatttaaattatatattttttgaacaGATCAATACCTTTGTGACATAAAGACCGGCATTtcattgtatataatttaaacaatatattaaagcTTCTATAAAACAGAACTATGCTATACACTCCCAAagtagtagttttttttttttttctttgtcaaaaGTTCAAAGGCAAGAGAAGTGCAGTCCGGATAGAGACTAACAGTGCTGCTCAATCAGGGCACGCTTCTATCACAAAAATCAAGTTGGTTAAATTGTCAAGTAGCATAGACACATATcagcaagaaataaatactacaaaTTTAATACCAggacacaaaaatatattaaatcatacTCATTGCACTTGAAGCATTTGTATTCTCATCATGCCCTTTTTTCCAATTGTGGCTCTAGTGATATCCAGTGGACAATGCCATGTTTAAACAGTAGGGTTTGCTCTCTCTCCAGAATGCTTATTTAGTGTAATCATTTAATTCACAAAACATTAcccaattaaaacacatttagtgCAAATGCAACTAATGATAACACTATCACAATGCACATACTTTTTGTAAACTCCCTAAacacttgctttttttttttccttaaaagtAGAGTGTATCCTACAGACTGAACTGAAGTCCTCTTCTCTTGCCTGACCAGTGAAGGTTTACCAATAGACTTCACTCTAGGAACCACTGGGGCATATTCAATTTAAGATCTCTGTATCACATGCCGTATACACAATAGTGACACTAACGGTCCGTGCTGATTGCAAAATCACAATATTAGATGAAAACAAGGTAATAAACCAAGTTAGTTAAACACCCCCCTCAGATGTCCATCACATAAATGTGTCAAAAGAAATGAAGAGCTAAGAAggttttactttgtttactgAGAGTATCCAGTGCTAAATCACATGCCTCATCCACATTACAACACAGGCACTTCTCTAGTGATTTCAGAGGTGTATGGGCTGTATGGATGTCTTGCTCCCTCGCAAACATAAGCAATTGAATTGCAACACAAAAGCAGCAGATATCcatatgtataaattataaaatgatatgCAGAAAGACCATGTTCACCATGTACAGACCAACAACAAATGAGGGGAACTTAATTTGTACCAGATTGTACCAATGAATATATATGATCATGTACTGGCACAAAAAGTAGTGGTGgttgtgtttttcaaactgAAGCTTGCATTGCTAATTTGAAATACTTGAACAATGAACAGCATAGCTGAgccaatttaaataatgcactttaattaattaataaattgtgatgcatttctCAAGGCCAAACTAATTATTGCTTGACTTGAAAATCATTTGCTGTACTCCCCTACTTCCTAGTGGATGTGCTGGCCCCACAGCTGCGAGACCAGCACCCCTGCTCTCTACACATAGGTATTACCTGTGACTGGCTCCTTTCCTTTTcactttatttcttttttctcgCATCACATTTGTACAACACATGTAGAACTAAAAACTGTAGAAATATAGAgatttctgaaaaaagaaaaaaaatacaaagctttTCAATATTTCTCCATCAGACCCATTCTAGGTCTTCACAAGAGAGACGAAGAAGAAAAGGCAAGGTCATAGGTCAATAACAGCCCTCAAGAAGTATTACAAACAAGACAATAGTTTAAGAAAAAGGCGACCCATTTTTAGAAAAATTAGCAGCATGAAAGTAAGCCATGAGATCAGTGATTATACATAGCAAAACAAGCAACAAGAAATTGGACCTTTTCAAAAAGCAGGACCCAAATAGAGACAATTTACTTTAGACCTCTAAAATGaccatgtatatgtatatgtgtatatatatatatatatacacacacacagctctgtaaaacattaaaaaccacttaacattgatttctgaatttggagtggtctcaattttttccagagctgtatatacatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95496 True 2943 lncRNA 0.35 1 5947878 5950820

Neighbor

gene id symbol gene type direction distance location
AMCG00009922 NA coding upstream 7788 5933021 ~ 5940090 (+)
AMCG00009923 ube2r2 coding upstream 52901 5890280 ~ 5894977 (+)
AMCG00009919 NA coding upstream 152952 5786425 ~ 5794926 (+)
AMCG00009916 LOC103362416,LOC106953753 coding upstream 203736 5717698 ~ 5744142 (+)
AMCG00009914 NA coding upstream 344895 5595438 ~ 5602983 (+)
AMCG00009926 NA coding downstream 35447 5986267 ~ 5998592 (+)
AMCG00009930 NA coding downstream 161476 6112296 ~ 6149391 (+)
AMCG00009928 NA coding downstream 199198 6150018 ~ 6154858 (+)
AMCG00009936 s100z,LOC107663035,LOC107720888 coding downstream 229583 6180403 ~ 6185389 (+)
AMCG00009934 NA coding downstream 274716 6225536 ~ 6241567 (+)
G76484 NA non-coding upstream 1825 5945706 ~ 5946053 (+)
G76460 NA non-coding upstream 46896 5897310 ~ 5900982 (+)
G76434 NA non-coding upstream 171704 5775956 ~ 5776174 (+)
G76418 NA non-coding upstream 175929 5771674 ~ 5771949 (+)
G76417 NA non-coding upstream 176786 5770255 ~ 5771092 (+)
G76550 NA non-coding downstream 210636 6161456 ~ 6166615 (+)
G76555 NA non-coding downstream 216791 6167611 ~ 6168308 (+)
G76658 NA non-coding downstream 791112 6741932 ~ 6742239 (+)
G76659 NA non-coding downstream 803701 6754521 ~ 6754936 (+)
G76663 NA non-coding downstream 839946 6790766 ~ 6792207 (+)
AMCG00009915 NA other upstream 178826 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 699697 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 1026994 4910970 ~ 4920884 (+)
AMCG00009863 NA other upstream 3179370 2752260 ~ 2768508 (+)
AMCG00009852 NA other upstream 4524756 1409180 ~ 1423122 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other downstream 108422 6059242 ~ 6085806 (+)
AMCG00009959 NA other downstream 1091777 7042597 ~ 7062734 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 4352106 10302926 ~ 10313486 (+)
G77423 NA other downstream 5198806 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 5339083 11289903 ~ 11389245 (+)

Expression


Co-expression Network