G76935


Basic Information

Item Value
gene id G76935
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 7889483 ~ 7894390 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96033
AATTTCTTTAAGAAATGCTGTTCGGTTGATCTTCAAATCCAGTTCTAAGACATACTTAGCTTAAATTTATGGGCACAGTCCAGCaactgaaaaaaggaaaactctggataaattatgttttagttATCAGGCTGTAtctttttatattgaaaacataacataaatgcTGAAGTATTGAACTGAAGGTTTAATTATCACAGCTAATATTGGCAAAATTGTTTGTGGAAATATAGGGCCATATTCAGTTAACACCTGtttctcaaataaaaacaaaatagtgaGGCAGTGTCAAATGAAACTCTCAGAAACAGAGTGCTTATAAGGTTACAATAGTCAATGAcatgatttgatttttaatttgtaaaattgggtgtttaatattttaccaGTGGGGTGGTAAGTTTGCCGTGATGTTCAAGCTTTATGAGTATGGACCACTGTTTTCACAAATTAGGCAGTGCATTTCTTAAAACGTATTCACCATCAGTGTTGCATAAGTAGAATATATCTATTTAGTACATATTCAGACAGTttcaaaaacttaaaaaaatactcaAGCCACAGTATTTGAAAGTTTCGACTTGAATAATTGATTCAGTACATGTAGCTTACAATGTGGGTTGAAAAACAATACCACCAGAGGAAAAGTGTTTGAGGTGTTTTACAATGTGAACAAATTATGtactgaatacaaatatatagactAGCTTTTATATGAAGTTCAGTTTATAAAAACAGTGACAAACAAGAAGACGTATCTCTGGGTTGTAGACATGGTATGTTTTTACTTCAAGTTGAAAGTATGTTTTGAGGCCTTGCTATATTGCTATTCCTTAATgtacaaaagcattttaatatattttccctaAGGTCAATGATGTAGATACATTAGGATCTGCACAGACTTAAAGCATCAGGACAGACACAAGAGCAATTTTACCCTTATGTAAAAATGCCAAATTTTCTGATCACGTATGAGAGCTAATTAATGTGTGATTTGCGCCATATTTTTACCTAAATGTGAATTAATGCTTTgttagtaaattaaaatgcagatgaTGCATATATTTGAaagatctatttttaaaaagtaaacacatttgtgGAATTTAAGGAGAAAACACACTTTAATCTAAGTATCTTGCTGTCTACATCAACCAAATATCATCTGaggtaataataacaataataataataataataataataataataatgttacccATCTGCTTAATGATTTAGATACATGAGTTTATGTAATTTAGTGAGACCCCGGACCAGCGGTGAGTTGTGTTTGTAGAGTGATGGTAATTCCAGAAACTCTTCTGTCCTTGTTGCTCAATTTTCATTACTATTACATAAACAGCAGAACATTAACATCACCATATGCTGTCATTTTCTAATGAACACAACATGGTGTATGTTAAAAGCTCATGgtctttcacatttcattttaatgtgcttTGTGGTTGTGATGATTCTTGTTATCTTTTATTCAGAGGttgatttgcttttttctgATAGCTGTCACAAGTGGCACCCGGCAACAGGAAACTCTCCCATGCCTCGTTTCTTAGCAACGGTATCTAACCGAAAATTATGTATGGTTTGGGTTTTGGATTTGTGCATAATCCAGATAAACTGATTGTGAAACCCATGCCAAACAAGGATATTATAAATAGAACTTTATTTTTgacaagacatttaaatttgtataataTTTGCCTAAGTATCTAATAATCAATCTATCTAAGCATAAAGACATATGTGTAAAGTTTAAGatagaatatacatttattttccccacaaGGAGTAATGCAATGCATTCATTAAAGTTCCATAGTAGAAATACACAGTCAAGGTTACAGTATTGGTTTCCATGTATTTGAAGTTTAGACCAaatttttctgttaattatattttccacCATAGACAGAGTAAAGAAGGTCCTTGATTACGTCTAATATACGGGAAATTAACACAGAATGTGGAAACTGTAACAATTTGTGTAAATGTAGTTGATGGAAGCAGTCagttacttttactttttaccATAAACTGAATTTTGGCTTGAAATAGTTCCTCCCCTACTGAAAGaagcttttttttccaaactATACACCATTACAAATTAGACATGAGCCTCATTTAATGTTAACCACGTCTGGCTGATTATCTTTAGATAttagagatgtttttttgtaagaaaaatgtaatgtcagtTGGATAAAtctggaaaattaaaaatgttaagaaatcCTAGCTGTTAACTGCCAAAAAATGACCTGGCAAGATTGGAGTCAGGGCAAATACAGAGGCCCAGTCATCTCATGTCTTACataagttaaatacatttatagtgtgcttcattatatatatatattatatatttttccctcttATTTGAGCATATGGTGAGGATAGCATCTTTGTGTTAAAAACGTGCCCGTGGTTGAGCAATTCAGGGATACTGTATTAATGGAAATTCCAATTATTTTATCTAGACTACTCAAAGAAAATAGCCATTTCAAGAAGGAAAAAGGCACATCTGGGCTTGTTTCCACAGAGaatttaaattactgaattcaACATGGTTAAGGTAGACATAAGCCGTTTAGGCAAATACTTAATCCAATTCAATCTCACTGTGTTACACAGTACTAGGAACACTGTGTTGCTACTGAGATTCATCTGTTCTCTATCCAAGaaacacagttttattttcaagtgAAAATCTGTCTTCGAAGAGTAGGTTctctcatttccttttttttcatttcacctgtTCTGTTGTATTTGGCCATCATTCTTgactttgtgtgtttatgatgAAGAGTCTAACAGCcatgtacattttaacaatgCAGTATAGATTGACAGCATATCAGAGATACAACAGCCGTGTATCAAACCTTTAATCACAACATCCATTTGAGTATAGAAAACTAGTAGACTATTCCTTGCATTGAACTCGCATACTTGTTCAGGATAACAAGGATTCACTGACAAACGAATAGCTGCATAagtcaaagctttttttttttttttttttttaaagtaaaatgcatgtttatacACAGCTATCTTTACTTCACAGAGCTCTTCTTTCCTTTAATCCTGGGCAAGTTGCCCATGTATTATTATAGTGTCACTTTCTGTCTTCATTTGTGCTCGAGATATTCATTTTCACTGAACAGGGCTGCTTTATCTACCAGTACAGACAGGTACAATACAGATGACTTCtgaaaccccctcccccttaaACGTCCACCACACATTTCCTATGTTTCTGACTGATACATATTCCCTGCACATATACGTTTAATTATGCTTGTGCCGTATTGAAAAAGAACAAATTTAGTATTCTggaggaaataaattaatttgtccTAAAACTCAACAAAGCCCAAAAAGGGCACATAGTATATTATAAGGCTTACGTGGACTAATGGTGAAAATAGTTTATTAAATGCCTAGGAACACTTCTTTGATATTGGGGGGTTTATTTATGTGATGTAGCCCTTCAGCCTCTGTTGATTTGCATTGACAACACGAAAGGAGATATTCTCATGTTTTTCTATCTTTAATTGCAACTTTGAAAAGCTGCTCACGgttctgtaatgctgtacaCTTTAGACATGCCTGTGTAAGCCTTTGAAATTCAGCTGAGGTTCGACTGCTCCTTTTAGAATACACAGTAGGGTTTACTTTTTTGTTctgtacatattgtttttagctctattcatttctttttgtgaaataaaagcactgcccattttattattaatattatgatgatgatgattgtctttattcaaatgtaatcgGTTGAACAATGCTCAGACCATCTTTCCTTACAGACAAATTAACTGCCTTTACATGCACAGAGACAAGCATATATAAACCTTACTCTGTTTTGCCCTAACATAAGCTATCTCCAACTGAATGGCAGTTCACAGAAGCCTTCAAATAAAAGTACTTCATAGATTTACTGTACATACTTCATATGCTGCATAATAATGTGTGGaagattttaatgaatttacATAAAAGGTTCATGAGCCTGCATACTAATTGCTGAGTGCATACAGTtgtagctgaaaaaaaaaatccttaaccTGAAACAATGTTATGTGGTATTTGGTTAAGTAAATAGTTACTTTTTCACTAAAGATTTAACTGAACTCGGATGAGACGGGCAACTGGTAAAATGCTGACTGCTAGTTTTCTATTAAACtctaaaaatatatagcctacttGATAAATAAGTATGAACAATATTGTTTCAGGGGAGacctgtgaatactttcaaccaTAACTGTGCCTAAGATCTTCCAAACACAATGCAAACATAGAGTATTGTATGTTCAAATAATCAttgcataatacatttgaactgTAAGAAAATATAGGTATGTAATACATTATGCATTGATGAGATGTTCAAGCATGAGATATTTCTGGAATTGTCTTTTCCATACCAGGGTCCAGGGCTTCTGTGATTTCTGTGCAGATTGTTGTTGGAGACTTTTGTgtttccaaaattaaaataaactttttaagTGGCAAGAGTGGACGTTAATACTGCACAAGCTATATAAAATGTTCTGATGTAAGTAGAAGTATCTGCATATAATgtgatgttatttattgataccttttttttaatattcctgACTGTAGATATAACCTCTTGGTTCTCTTGTGTAATATATTCTATTCAGAGAAGATTTTGTCATTTCAAAAGGTCACCTGACTTTTCCAAGTGTCTATTAAATAACGATTATGTGTACATGGCTTTGTAAACATTTcctgcaaaacagaaatgtgatttatttagatTGCTATGGTatattgacaaataaaaaaggaatacaatatCAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0001501 skeletal system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96033 True 4884 lncRNA 0.33 2 7889483 7894390

Neighbor

gene id symbol gene type direction distance location
AMCG00009979 NA coding upstream 1411 7882634 ~ 7888072 (+)
AMCG00009980 NA coding upstream 19593 7861151 ~ 7869890 (+)
AMCG00009976 eef2l2,LOC108255789,LOC108414462,LOC107681082,LOC107746808,LOC107676651,LOC107552597,LOC107708638 coding upstream 200990 7674564 ~ 7688493 (+)
AMCG00009972 NA coding upstream 244540 7643535 ~ 7644943 (+)
AMCG00009970 NA coding upstream 246957 7638579 ~ 7642526 (+)
AMCG00009984 zfr,LOC107681158,LOC107746805,LOC103397483 coding downstream 109447 8003837 ~ 8029681 (+)
AMCG00009985 NA coding downstream 140233 8034623 ~ 8053793 (+)
AMCG00009982 golph3,LOC107681169,LOC107552603,LOC106570936,LOC107746803 coding downstream 180815 8075205 ~ 8082608 (+)
AMCG00009983 NA coding downstream 224045 8118435 ~ 8119318 (+)
AMCG00009986 LOC107601999 coding downstream 262428 8156818 ~ 8204133 (+)
G76864 NA non-coding upstream 236652 7651722 ~ 7652831 (+)
G76863 vcp,LOC107602017,LOC107552546,LOC107676650,LOC107708640,LOC107681079,LOC107393925 non-coding upstream 239292 7649490 ~ 7650191 (+)
G76859 NA non-coding upstream 241317 7615958 ~ 7648166 (+)
G76827 NA non-coding upstream 453936 7434656 ~ 7435547 (+)
G76807 NA non-coding upstream 602084 7280976 ~ 7287399 (+)
G77012 NA non-coding downstream 419726 8314116 ~ 8317675 (+)
G77028 NA non-coding downstream 544117 8438507 ~ 8438786 (+)
G77049 NA non-coding downstream 803288 8697678 ~ 8700117 (+)
G77073 NA non-coding downstream 913961 8808351 ~ 8808607 (+)
G77126 NA non-coding downstream 1309952 9204342 ~ 9205423 (+)
AMCG00009959 NA other upstream 826749 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 1803677 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 2120431 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 2641302 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 2968599 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 2408536 10302926 ~ 10313486 (+)
G77423 NA other downstream 3255236 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 3395513 11289903 ~ 11389245 (+)
G77541 NA other downstream 3806316 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 7097529 14991919 ~ 15032181 (+)

Expression


Co-expression Network