G77049


Basic Information

Item Value
gene id G77049
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8697678 ~ 8700117 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96169
agcagatgaaagacacatcatgcttacttcccttcgcaattggaagatgtccaaccatacctccgatgtggcaacaaagccaagcgactcaactatgcatgaaaacacaggaactggggtgcagaaaaatggcagccgGTGCTCTGGACtaatgagtcaaaatctgaaatatttagctgtagcagaaggcagtttgttcaccgaagggctggagagcggtacaagaatgagtgtctgcaggcaacagtgaagcatggtggaggttctttgcaagtttggggctgcatttctgcaagtggatttggggatttggtcagaatgaatggtctccacAATGCtgtaatattgatttgatgtagatttttcttctgttcactcactttgcatttagtgaaTTGATGCATATCatctattaacatctatttttgaaagcattcttactttacagcattttttcacacctgccttacccttttgcacagtactgtatacaaaattaattatcaGCAGACCTAAGTGTCATAACAAATGTCTcatgataatacattttgtatatatttctcttataccaaacacactgtaaatgcagaaaaatgcataattttacaCTATATGAAAAGCGGCATGCTacttactgtgttttttttaattattggcCCTCTTGCCCCTACAGTTATATAACATGCAAGACAAATatgatttgaattttaaaatgacttcagttttattgcatGTACATATGTACCCTCCTCATATGTAggataattttaattgtaattttcatATGAAATTATGCTTCCAAATGCATTCAGCACTACAAAGTAGAGGTGACTATGATCTTAAATTTGATCTAAGTCTTAACCTTATTTTACTGCATAATTTAatcagctgttttttcttttatatttgtttttgcttattttatttttattttataagagcCATGTGTAATTGAGCTTTACTGCTCAATCAAGTGCTTGTAAGTTTATTTGACCAAGAAACTAATTTGGCCCTTTCTCTAAGCATCATATAGCACCTGCACTGGCAAACTCTCTGTGTATAGAAACATATGTGTAGTTACGTCCTagtgattttaataaatttgccACAGGTGGAATGAGATctgtcaaatatttaaatagttttcaaatgttacattaAAGAAGGATTCAGTATGTAAACATAAATCAGGGGTATGATTGCACAAGCAGTCAAAGACATATCTATTCACCCACTGCATATGCAGTGTAGTGTAACAAAGTTCCCAGTCCCATTCCTATACATGGAATATTAAGTAAggcaatatatcacattttgtTCAAAACTGAGTAACGACAataggaatataaataacattgacattcatgtattaatatattattatataaaatacaaaccgTGACAGGAAGGAGATGTAGAATGACTACTGTTTGTCCATGTCCATGTTGTTTCTTGCAGAGTTTACACAGCAGAGTGAATATGTAAGTCTTTGATTGTACTAGTAAACACCagacaaaactacagaactgttatgcttaatttttttgtatctaGTGTATCAAGGAAATCCCAAGCCAAATCTTTGGTATAAAGAGAAATAGTTATCATTGattttcattcagtttgttGGGCTAGGCTTCCTCGGGTATTGCAGTGATATGtgagaaatgtaattatggCTCAAAGTCATTATATACTGCCTGTTTAGCACATTTCATCAGTACACAGAGTATGAACACTGTAAATATGGGTAACAGTTTTATCCCGAAGtgtaagtattttgtatttttatgattgAAGAGagaagatggggggggggggacacacaACATGttggtactttattattataatttatcatACTGTCATGTcatcatattaaattaatttagctGTCGTATATGTTTGGTTTTATATATCAACCCATTTTTGTACaggtgtttcttgtttttctttttaattgctgGATTCTGATTATCCGGTTTGACACAcaaactgcatgtttttttagaTTTCCAATGTTTCAGGTATTCTACCCacaaatattaaagcaatatgtTCTTGCAACATCATatataatatgattttaatcacggttgttttgaatgttttcattaaatgtccCACCATTTGCACAGCTATTGTGGTTTACAAAGAAATCACAATAAGAATAATATGAGAAGTGTGTAGAAATAATTTTAGatgttgtatatgtgtgtcaatgtatgtaaaataatctttGTTTCAACCTATGAATCCAGGGGACATtttcaatgaaaaacattactCGACTGGTCATCTGCACTGTGTATCTGTGTTCAAATATAATGCACTGGTTTAATTTATGTAACTTCATCAGCACAGAAGATTATACATCTTTTTGACTTGCCATTActgaaatgctgtaaaataaaagtgtaataacaataataataataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96169 True 2440 lncRNA 0.33 1 8697678 8700117

Neighbor

gene id symbol gene type direction distance location
AMCG00009993 NA coding upstream 1617 8668875 ~ 8696061 (+)
AMCG00009990 isl1,LOC107661270,LOC107374027,LOC107708623 coding upstream 267045 8404843 ~ 8430633 (+)
AMCG00009991 NA coding upstream 301710 8394952 ~ 8395968 (+)
AMCG00009988 parp8,LOC107746800,LOC107661236,LOC107708633 coding upstream 387408 8270117 ~ 8310270 (+)
AMCG00009986 LOC107601999 coding upstream 493545 8156818 ~ 8204133 (+)
AMCG00009992 NA coding downstream 24175 8724292 ~ 8760028 (+)
AMCG00009995 NA coding downstream 69360 8769477 ~ 8776011 (+)
AMCG00009996 ndufs4,LOC107661235,LOC107602025,LOC107599174,LOC107708631 coding downstream 103893 8804010 ~ 8807887 (+)
AMCG00009997 NA coding downstream 277837 8977954 ~ 8978388 (+)
AMCG00009999 snx18 coding downstream 280638 8980755 ~ 8997868 (+)
G77028 NA non-coding upstream 258892 8438507 ~ 8438786 (+)
G77012 NA non-coding upstream 380003 8314116 ~ 8317675 (+)
G76935 NA non-coding upstream 803288 7889483 ~ 7894390 (+)
G76864 NA non-coding upstream 1044847 7651722 ~ 7652831 (+)
G76863 vcp,LOC107602017,LOC107552546,LOC107676650,LOC107708640,LOC107681079,LOC107393925 non-coding upstream 1047487 7649490 ~ 7650191 (+)
G77073 NA non-coding downstream 108234 8808351 ~ 8808607 (+)
G77126 NA non-coding downstream 504225 9204342 ~ 9205423 (+)
G77125 tmem175,LOC107744870 non-coding downstream 505518 9205635 ~ 9208519 (+)
G77135 NA non-coding downstream 651474 9351591 ~ 9351870 (+)
G77192 NA non-coding downstream 716313 9416430 ~ 9419370 (+)
AMCG00009959 NA other upstream 1634944 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 2611872 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 2928626 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 3449497 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 3776794 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 1602809 10302926 ~ 10313486 (+)
G77423 NA other downstream 2449509 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 2589786 11289903 ~ 11389245 (+)
G77541 NA other downstream 3000589 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 6291802 14991919 ~ 15032181 (+)

Expression


Co-expression Network