G77125 (tmem175,LOC107744870)


Basic Information

Item Value
gene id G77125
gene name tmem175,LOC107744870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9205635 ~ 9208519 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96265
AGCTTTAGAGAGTTTATTCACAAaaagatgcaaaacaaaacatcttatCTAGGACAGCACATTGGTAACAGTGAAGATCGTTGCATGATTCCTATAGGTTTCATTTGACTTTCTTTCGTATAGGCAGAGGTCATGTAACTGCATTTAGCCTTAAAGCAAAGCAATTAAGAAAAGTACATTtctgggaaaaacaaacaaaattgtttATTGCTTCCTAACCAGCTGCAACCTGGAAAATTTAATGGTTGTTTAAACCGTAATactaatgtattaaatataatataattcaacCTAACATCTTCTCTGGAAGCTTGAGGTAAACTGAAATGTACAAAGTAAAATGTCTTGAATACATACGATCAACAGTGCCATctagtgcaaaacaaaaaaagaccaGTCATTTGGTCATACTGTCTGTAACTATAATCATTATCCAGTTTGTATGGAGCTCAACAGTTTACAGCAAATTATACAAGTAACTCCCAAACTTTTCTTTTGGTGATTTGCTAAAAATGAGTTGATTGTATAAAGTTGAAATGTAGAAACAACAAAGATTAATGCTTTTCACAGAAATAAGGCTTTTCACTGGGTAACGATGATTACAAATGTCAGAAGACAGGTTCCCACACTAAGATGAAGTGAAGGGACATTTCAGTAGCATCAGAAATCCTCTGAAGGTTCTTGCACGCACAGGGGATGCTGCACATAAAAGCAATAGCATCCATACATCTATAAAAACAGTGACCAGACTGAGGAACCTACTGGTACggacaaatattaaagtgcataaatatttccttttgttCCATACAAAAGAAGTGCAAATAAAGAAGTGGCATTCCAAGTTCCACGTTCCAAgttaaacatttgtttctacATGTCAGAGGAACATGTTATAATGGACATGTTATCGAAGTAGAGAATCTCTCTCTGGTTTCTTACACTTAGTATTCTTCAAGTAGTCAGAGGATGTGTTTACATCTCTGTATTAGAATCCTAAAAAGAAACCTACACACAAATTCCAGACTCGAAAAAATATACCTTCATCCTGACgtatatcattatttatattcctacagattacattaacattctGGTGGTTTGATTTCATATTCATGTGCAagatacaaacacaataatgtTCACTCTTTTCTATCCACTTTGAAATAAGCAATGTTCCCACAGATTGACGGGCAACTCGGTAAATAATCACAATGTTTTACCTCAGTGCGAACAAACGGAAGAGTATTACTCAGATCGCTTCTCACAGAGTGTCAGTAAATCTAGTCATTGATACTTCAGACAAAGGATCCTACTAATGCACTGCCATGTATTAGCAGCAGACCTGCAAGATTGGTTATGAGAAAAAGCTTTTCCAATCAACCATGGCAATTAGGTTACTAGACCTGAAAAGCGATTATAGAATACAATTCatgatttagtattttatttcagttttctcaGGATAATATTCTTTTCATGGCAGTTTAAACAGCTTTACCTCTTAGGGTAGGAATGCTTTTCAAATGAGATAAAACTGTTTGGGTTAGCATGCACTTGAAAAGCGCCTCATCACCTTTAAGCAGAGCAATGTGCACAAATATGGACGGATTCTACTTATTCCTGATTCGGAGCCACAGCGCAGCCACGCCCTCCTTGAAACTTACTTACACACGCTTCCATGAACCATTCCAGTTAGGTTAACTGCACATAATACACAAGCTGCATCTCCTAAATATATGGCCATCAAACATCGTCCTTGAGTGAAAGTCAGCCCTCAGAGCGGCTTAATAGAAGAGCAATCGAAAAGGAAAGCTGCGGACAATAACAGTTGACATCTAACTAAAGAATCAATATGTGTAACACACCAGCTGCGTGGCTTTAAAAGCGACGCAGCACCCCGAAAGGCGTAGCCGCTTGAAGATGACAGAGGTGCCCGTCTCCATTTTGCCTCCTAACCCACGATGCCAGTGCTAAGATGGCACATCATTGAAAGGCAGTCTGGTGTCGTCCTCCTCCAGCGCGTTATGAGAAGGCTTGGCGGGACAGAAAGCCCACCTCAGGAGGGCTAAGGTAATCCTGACGAGGATGCGGAGGGCGAGGAAAGCGAAGGGCACGCCGATTTCCATGAGGTGGAAGATGGGGGCGCTGAACTGGCTCAGGATGCACGTAATGAAGAAGGTGCATAGGGCGACGCAGGGGTACAGGGAGAGCTTGGCGAACATGAAGGCGTGCTCCTTGCCTCCGTACCTCACATAAGGGTGCAGGGTCTCCCTCTCGTTGAAGAGTGCCACCACCCAAATGGCCAACTGGAAGATGCCCGCGAAGAAGATGATGACGCAGCTGATCTGGATGGCCTCCAGCTCGTTGCGGGACTTCTCCGCAAACTCGTGCGTCAGCTGGTAGGCCAGAGGCAGGCCGCCCACGAAGGCCAGGGAGAAGGTGTTGAGCAGGCCCATGAACCGCGTCGCCTTGGTCACGTGGAGGAACAGGGAGTGGTGGACAAACCACAGCAGGCCCACCGTCACAAAGGAGCCGAAGTATGCCAGGTACTCTGGGCCAAAATTTTGCAGGGCTTCAATCAGGCTGCCGTGGAATTTCTCCTGCACCTCCCTGGGTTCAGGTACGTTGTCCTCACATGTCAAGAATTAAAAGTGTTGCCACAATAGCGTATACACCATCGCTGAAGGCCTCTATGCGCTCCTTGCTGAGCGGCTCTTTGGGATGGTATGTGTAGTACAGCATGCTCTCTGGCGGCTCCTCCAGCTGGC

Function

symbol description
tmem175 Predicted to enable potassium ion leak channel activity. Predicted to be involved in phagosome-lysosome fusion; potassium ion transmembrane transport; and regulation of lysosomal lumen pH. Predicted to act upstream of or within potassium ion transport. Predicted to be located in endosome and lysosome. Orthologous to human TMEM175 (transmembrane protein 175).

NR:

description
PREDICTED: transmembrane protein 175

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96265 True 2771 lncRNA 0.43 2 9205635 9208519

Neighbor

gene id symbol gene type direction distance location
AMCG00010002 cds1,LOC107602031,LOC107744867,LOC107663388 coding upstream 1536 9178039 ~ 9204099 (+)
AMCG00010003 wdfy3 coding upstream 33987 9073241 ~ 9171648 (+)
AMCG00009998 NA coding upstream 135934 9058476 ~ 9069701 (+)
AMCG00009999 snx18 coding upstream 207767 8980755 ~ 8997868 (+)
AMCG00009997 NA coding upstream 227247 8977954 ~ 8978388 (+)
AMCG00010005 NA coding downstream 138507 9347026 ~ 9350311 (+)
AMCG00010007 rasgef1b,rasgef1ba,LOC107663389 coding downstream 151597 9360116 ~ 9375744 (+)
AMCG00010006 prkg2,LOC103134980 coding downstream 184362 9392881 ~ 9414133 (+)
AMCG00010012 NA coding downstream 463702 9672221 ~ 9688099 (+)
AMCG00010013 antxr2 coding downstream 482054 9690573 ~ 9713280 (+)
G77126 NA non-coding upstream 212 9204342 ~ 9205423 (+)
G77073 NA non-coding upstream 397028 8808351 ~ 8808607 (+)
G77049 NA non-coding upstream 505518 8697678 ~ 8700117 (+)
G77028 NA non-coding upstream 766849 8438507 ~ 8438786 (+)
G77012 NA non-coding upstream 887960 8314116 ~ 8317675 (+)
G77135 NA non-coding downstream 143072 9351591 ~ 9351870 (+)
G77192 NA non-coding downstream 207911 9416430 ~ 9419370 (+)
G77198 NA non-coding downstream 220724 9429243 ~ 9431629 (+)
G77201 NA non-coding downstream 309139 9517658 ~ 9518012 (+)
G77207 NA non-coding downstream 352790 9561309 ~ 9561806 (+)
AMCG00009959 NA other upstream 2142901 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 3119829 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 3436583 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 3957454 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 4284751 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 1094407 10302926 ~ 10313486 (+)
G77423 NA other downstream 1941107 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 2081384 11289903 ~ 11389245 (+)
G77541 NA other downstream 2492187 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 5783400 14991919 ~ 15032181 (+)

Expression


Co-expression Network