G77233


Basic Information

Item Value
gene id G77233
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9741789 ~ 9743100 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96390
CAGCATGTCAGCAAATCAAGTAATTATCCACTTCCTAATTTTTGTTACCAATATGTATGAATACAGTGTTGTTCTAATTGTGGTTTATTCTTAAGGATAttgagtttttgtttaattaaatctaagTGTccttacttaaaaatatatatacaggttAGTCAATATATCCTGTTTTACTACTTCTGAGTGTCTGTATGTAGTCTTTATTCTAAAGTCCATCCATTGATGGTTttctattcttttcttttttttttttttaaagcatactCCTaaggctgtttatttttatttaaagttaaaaacgCATACAAAATCCTTTTCACTcgtcatgattttattttgggggcCATCTGTAAACCTACACTTGAAGACTAGACTCCCTACCCTCTTCTGTTTTGTCCCTTGTTAAAAAGGCATGCTATAGGCAATCTTTAATTGTGCTCCAAAAGATTTATAAGGCTAGACATGGGGATGTAATTATACAGTATGTAACCAAACCAAAGACGCATATATTGCACAATGGATGCTGGGTAGGCATCTCAGTGAGTGCGTGGCACTGGAGGCAAAGTGCACACAAATAGCCCTTCAAGGGTCGGATAGCTTGGAAATTAGGTCTCCCATTTAGtcacaataaaaaaagtgcAACATATACCTAGTGTTTCCTCGTCATTTGCATGCTGTGGTGATATGGCTTTCATCACCATCAGTTACATTTGACCAGAAGTCACATTAACCCGTCCTCCTGTAGCTTTAAGAAACAGATGCCCCCTCTTTAGGAAGAGGCTTCCAAACAGTAAGGAGGCATAAGGATCTGGTTGCGAAGTTACATTTGTAAATCAGTATAGTCCTTTTCCATTGGGTGGCTCAGGGTGTTATTGCATGTAGGATGTGGGGAGAGATGACAGTAACAGCTCTTCCACTCCAGTTTCCATGTACTGTGTACGTCGAGAAATCCAAGgcacatttataataatgaagatGCTCTGAATTCAGCTTTTCcgtatattttataaaaaatgttatgcCAGATTTGGATTAGTTTTTAATCAATACCACAATTAACTGTCTGTCAAGCTTTGTCCTAGTAGAAGTGTCAAATAAACTGCTGAAGAGTCTTGTGTATCCTTTTCGTGCCACGTTTCCCTACACTACCTTGTCACCAATTGAATGTGAGGACCCTCAGCACCACAGTCCTCAGTTAAGCCGATTATCTGCTTACCTTTTTTGCACAGCTTAGAAAACAACGATATTATAACGCGCATATTCATAAGCTTTTTAATCTGAGAGTTtaataaactgctttaaaaaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96390 True 1312 lncRNA 0.37 1 9741789 9743100

Neighbor

gene id symbol gene type direction distance location
AMCG00010013 antxr2 coding upstream 28509 9690573 ~ 9713280 (+)
AMCG00010012 NA coding upstream 53690 9672221 ~ 9688099 (+)
AMCG00010006 prkg2,LOC103134980 coding upstream 327656 9392881 ~ 9414133 (+)
AMCG00010007 rasgef1b,rasgef1ba,LOC107663389 coding upstream 366045 9360116 ~ 9375744 (+)
AMCG00010005 NA coding upstream 391478 9347026 ~ 9350311 (+)
AMCG00010014 LOC106570899,LOC108433513,LOC107713330,LOC102780134 coding downstream 170942 9914042 ~ 9919171 (+)
AMCG00010017 smad2,LOC107743055,LOC108235010 coding downstream 402453 10145553 ~ 10154362 (+)
AMCG00010020 NA coding downstream 548874 10291974 ~ 10299643 (+)
AMCG00010025 NA coding downstream 590120 10333220 ~ 10359574 (+)
AMCG00010027 NA coding downstream 668606 10411706 ~ 10412110 (+)
G77207 NA non-coding upstream 179983 9561309 ~ 9561806 (+)
G77201 NA non-coding upstream 223777 9517658 ~ 9518012 (+)
G77198 NA non-coding upstream 310160 9429243 ~ 9431629 (+)
G77192 NA non-coding upstream 322419 9416430 ~ 9419370 (+)
G77135 NA non-coding upstream 389919 9351591 ~ 9351870 (+)
G77253 NA non-coding downstream 131768 9874868 ~ 9940435 (+)
G77255 NA non-coding downstream 179621 9922721 ~ 9926110 (+)
G77285 fras1 non-coding downstream 253254 9996354 ~ 9997885 (+)
G77346 NA non-coding downstream 572246 10315346 ~ 10316098 (+)
G77349 sigmar1,LOC107573076 non-coding downstream 587620 10330720 ~ 10332498 (+)
AMCG00009959 NA other upstream 2679055 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 3655983 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 3972737 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 4493608 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 4820905 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 559826 10302926 ~ 10313486 (+)
G77423 NA other downstream 1406526 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 1546803 11289903 ~ 11389245 (+)
G77541 NA other downstream 1957606 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 5248819 14991919 ~ 15032181 (+)

Expression


Co-expression Network