G77285 (fras1)


Basic Information

Item Value
gene id G77285
gene name fras1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9996354 ~ 9997885 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96453
tatagtaTTGCTGCAGTGCtaacttttgaaaatatttaaaaagttgtcACAGTtgtcacattttcaaattaaatgacacAGAAACAGGCAGGATTTCCCCGAACACTGATCTTCTCTGCTAAACATTAACACAAATTTAAACACCTGATGCAGACCTTGGATTATCCTGAATGCTTTTAATGTCAAATAATTGCACTTAAAAAAAGCAGCTATTTACACAGATCATCCAGTTCCAACCAACACCCAGAATGCGTAATACTTACATAAATCATAGTGGTTATATTCTAGCTTTAcagtttcaaaattaaatgcaggAAAAAACATAACTGAACAAATCATCAAGTAATAAACAAACCAAGTGCCTGAGCTACCTCTCTTATTTGGGGATGTTTCACTTCAATGAtcttaaaacaaagaaagcaataGCCAAAAGAGATGGTCTACtgatttgttgtgtgtgtatcttaCTGATAAATCACTATctgatacatacataaatcccCAGGAACCTCAAACAACAATTTATTCTCATACATCAGGGCAACGAATTAACGTagaatatcaataaatacagagaaagtGGTGAGAGGAGAGGTGTCACTGATTCTTCCAGGGGATGTTCAATGATAGATTTTAGATGGTCTTTTTTTGCAGTCAAATTATGAAATctattaaatgaaatgaaatctaCAAAACATGTAAATCAGTGTAGGGGTGAAGTCTATAACAACACAGTCAGGCTGAAACGCTGAGATCATGCTGTGCTCTGGTGAGGTAGCTCAGTTGTGAAATGGGTCACACTGCATAGCATAACTGATCAGCACTGTACTCGGcttcccttttcattttcatagttttataaaaatacagtaattctattttccttttcttattaCAAACAAAGATAGAAAACAAGATGTAAAAACATTCTTCTGTCCATCAGACCTCCGTGCCGTCGTGTAAATTGTTGTGAAGCTTGACCTCCAGATTCACCTGCTTCACCTTGACCTCCTTGACCTTGCAGGCCTCTTGGTTTTTGTTGAGGATGTTGACGTTCCTCACAGTGCAGTGTTTGCTGCTGAAGTTCTTCTCCAGGCGGTCCACATTCCTCAGGCACACTTCCACTTTCGTGTTCAGGGGATACATCTCTGGCAGGAGGCTAGGAAGACGAGCAGCAGGAGGGTGATGGCGGCCACAGCGCCCCCGACGGAGCCGCCGGCCTGGGAGGCAGAGGCGACTGCTGCCTCCATTTCCAGCCGTAGCGTCTTCATGTTGGTGCCGTTCTTCACCTGATCCCCCTCGTTGTCATAGATGAGCGATTCATCCAGGGTCAGGCGCCCGGACTTGTCCACCAGATCCCGTTGGTGGCGCTTCAGCTGGTATGTCAATGAACGCTGGAACCTTGGCCCTGAAATGGCCTCGGGGCCAATAACGTATATCACTTGCAGATACCACTGATGCCCAGCTTCCACCT

Function

symbol description
fras1 Acts upstream of or within several processes, including basement membrane organization; embryonic viscerocranium morphogenesis; and epithelial structure maintenance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including median fin fold; mesoderm; nervous system; pharyngeal arch; and trunk. Human ortholog(s) of this gene implicated in Fraser syndrome 1. Orthologous to human FRAS1 (Fraser extracellular matrix complex subunit 1).

NR:

description
PREDICTED: extracellular matrix protein FRAS1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96453 True 1474 lncRNA 0.42 2 9996354 9997885

Neighbor

gene id symbol gene type direction distance location
AMCG00010014 LOC106570899,LOC108433513,LOC107713330,LOC102780134 coding upstream 77183 9914042 ~ 9919171 (+)
AMCG00010013 antxr2 coding upstream 283074 9690573 ~ 9713280 (+)
AMCG00010012 NA coding upstream 308255 9672221 ~ 9688099 (+)
AMCG00010006 prkg2,LOC103134980 coding upstream 582221 9392881 ~ 9414133 (+)
AMCG00010007 rasgef1b,rasgef1ba,LOC107663389 coding upstream 620610 9360116 ~ 9375744 (+)
AMCG00010017 smad2,LOC107743055,LOC108235010 coding downstream 147668 10145553 ~ 10154362 (+)
AMCG00010020 NA coding downstream 294089 10291974 ~ 10299643 (+)
AMCG00010025 NA coding downstream 335335 10333220 ~ 10359574 (+)
AMCG00010027 NA coding downstream 413821 10411706 ~ 10412110 (+)
AMCG00010026 NA coding downstream 755907 10753792 ~ 10754548 (+)
G77253 NA non-coding upstream 55919 9874868 ~ 9940435 (+)
G77255 NA non-coding upstream 70244 9922721 ~ 9926110 (+)
G77233 NA non-coding upstream 253254 9741789 ~ 9743100 (+)
G77207 NA non-coding upstream 434548 9561309 ~ 9561806 (+)
G77201 NA non-coding upstream 478342 9517658 ~ 9518012 (+)
G77346 NA non-coding downstream 317461 10315346 ~ 10316098 (+)
G77349 sigmar1,LOC107573076 non-coding downstream 332835 10330720 ~ 10332498 (+)
G77395 NA non-coding downstream 979778 10977663 ~ 10978504 (+)
G77445 NA non-coding downstream 1357206 11355091 ~ 11355362 (+)
G77517 NA non-coding downstream 1587069 11584954 ~ 11586100 (+)
AMCG00009959 NA other upstream 2933620 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 3910548 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 4227302 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 4748173 5232632 ~ 5248181 (+)
AMCG00009898 tmem167a other upstream 5075470 4910970 ~ 4920884 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other downstream 305041 10302926 ~ 10313486 (+)
G77423 NA other downstream 1151741 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 1292018 11289903 ~ 11389245 (+)
G77541 NA other downstream 1702821 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 4994034 14991919 ~ 15032181 (+)

Expression


Co-expression Network