G77346


Basic Information

Item Value
gene id G77346
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10315346 ~ 10316098 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96526
ttcactgcttttccttctaTGTGTGGCAAGGAAGGACAGAATACTGATCAAATTAGATTGAGCTTTCGGTTTTATCTTTGCGTGCAAGCtgtattacatcagtaggttACCTGACAGTAATACAGTTTTACCATTGTAAAAGTTCACCTATGTAGTGTGTGCAGCACAGAATGCTATGTTGATGTGAAGGCTTTAAACGATTGGGAAACCCTGACACGTcaattcaaacaattaaaacacgAGATTATCTGAAGTATGACCAACTGTAAAGGCAGGCGggaaatacataaatcagttaattaaaCAGCACCCCACACTAATTACACGGCTGGGAGGAGGTTAGTTACACAGTAATTCACGCCCTGATATCActagtattgttttaaatcatgttaaatactttttaaaatggtattagCTTAATAAGATATTGGGTTTTACTACTCCacgaaattaattaaatacctgaTTTTTAGTGATTCTCACTGAAGATCATATCTGCTGCTGTTGTAATTGTTAAAGCAGTTagcaatttagtttttaaattattgtctattgattgcatttttaacggatttttattttcaatttatatgCAAAATGTGCTTCATGTTTCCACGCAATACACTGTTCTTAATAACTGCATTtatgcataaatatttaaatgtcagatGGCTATCATGGCTTGTACTTAttgatacaaaatgaaaaaaaaaagaaaacattatagaTACATTGAAATTACTACAgaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96526 True 753 lncRNA 0.33 1 10315346 10316098

Neighbor

gene id symbol gene type direction distance location
AMCG00010020 NA coding upstream 15703 10291974 ~ 10299643 (+)
AMCG00010017 smad2,LOC107743055,LOC108235010 coding upstream 160984 10145553 ~ 10154362 (+)
AMCG00010014 LOC106570899,LOC108433513,LOC107713330,LOC102780134 coding upstream 396175 9914042 ~ 9919171 (+)
AMCG00010013 antxr2 coding upstream 602066 9690573 ~ 9713280 (+)
AMCG00010012 NA coding upstream 627247 9672221 ~ 9688099 (+)
AMCG00010025 NA coding downstream 17122 10333220 ~ 10359574 (+)
AMCG00010027 NA coding downstream 95608 10411706 ~ 10412110 (+)
AMCG00010026 NA coding downstream 437694 10753792 ~ 10754548 (+)
AMCG00010024 cntfr,LOC106572571 coding downstream 477834 10793932 ~ 10798679 (+)
AMCG00010028 NA coding downstream 578111 10894209 ~ 10909942 (+)
G77285 fras1 non-coding upstream 317461 9996354 ~ 9997885 (+)
G77253 NA non-coding upstream 374911 9874868 ~ 9940435 (+)
G77255 NA non-coding upstream 389236 9922721 ~ 9926110 (+)
G77233 NA non-coding upstream 572246 9741789 ~ 9743100 (+)
G77207 NA non-coding upstream 753540 9561309 ~ 9561806 (+)
G77349 sigmar1,LOC107573076 non-coding downstream 14622 10330720 ~ 10332498 (+)
G77395 NA non-coding downstream 661565 10977663 ~ 10978504 (+)
G77445 NA non-coding downstream 1038993 11355091 ~ 11355362 (+)
G77517 NA non-coding downstream 1268856 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 1275120 11591218 ~ 11639790 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 1860 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 3252612 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 4229540 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 4546294 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 5067165 5232632 ~ 5248181 (+)
G77423 NA other downstream 833528 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 973805 11289903 ~ 11389245 (+)
G77541 NA other downstream 1384608 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 4675821 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 5208348 15524446 ~ 15534087 (+)

Expression


Co-expression Network