G77349 (sigmar1,LOC107573076)


Basic Information

Item Value
gene id G77349
gene name sigmar1,LOC107573076
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10330720 ~ 10332498 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96533
TTCTAAAGAGACATGGAACAATGAGCATCAGAAAGCTCACCTGAATGGCCGCTGGTGTCCACTGCCGTTCCAAAGAGGAGGACGTATTCTGTGAGCGAGGCGTGAAGCAGGCACATGGAGCCCATCCAGCCCCCCGCATTCACAAACACCCACTGCAGGTCTTCATCCTGCAGGATATGACCAGGGTACTTTTTCCTCAGCTCAATTACCACTTTGGAGAAGGCCTGCTCGTGATCCAGtcCGTATTGTTTGGCCAGCTTTGCAACGTCCTCCTTGTTGAACACGTACTGCTTGCTGCCCATCCAGTACTGCAAGTACTGCACCACTAGCGCCACAATGCCCAGCGCCACCAcgagttttaatattttagaagTACAAGACATTTCCGGACACTTAATGCCAACCACATATATAATTACTGAGGCTGAACTGTAAAACACAGAAAGTACAGAGACGCCACTGTTAAGAAACGAGACACGACGCTTCACTCAaacattaaacaacattttctaaagcttgtttttttgtatcacGCCGGTTAAAACCGA

Function

symbol description
sigmar1 Acts upstream of or within response to wounding. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in gut; head; muscle; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 16 and distal spinal muscular atrophy 2. Orthologous to human SIGMAR1 (sigma non-opioid intracellular receptor 1).

NR:

description
PREDICTED: sigma non-opioid intracellular receptor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96533 True 548 lncRNA 0.48 2 10330720 10332498

Neighbor

gene id symbol gene type direction distance location
AMCG00010020 NA coding upstream 31077 10291974 ~ 10299643 (+)
AMCG00010017 smad2,LOC107743055,LOC108235010 coding upstream 176358 10145553 ~ 10154362 (+)
AMCG00010014 LOC106570899,LOC108433513,LOC107713330,LOC102780134 coding upstream 411549 9914042 ~ 9919171 (+)
AMCG00010013 antxr2 coding upstream 617440 9690573 ~ 9713280 (+)
AMCG00010012 NA coding upstream 642621 9672221 ~ 9688099 (+)
AMCG00010025 NA coding downstream 722 10333220 ~ 10359574 (+)
AMCG00010027 NA coding downstream 79208 10411706 ~ 10412110 (+)
AMCG00010026 NA coding downstream 421294 10753792 ~ 10754548 (+)
AMCG00010024 cntfr,LOC106572571 coding downstream 461434 10793932 ~ 10798679 (+)
AMCG00010028 NA coding downstream 561711 10894209 ~ 10909942 (+)
G77346 NA non-coding upstream 14622 10315346 ~ 10316098 (+)
G77285 fras1 non-coding upstream 332835 9996354 ~ 9997885 (+)
G77253 NA non-coding upstream 390285 9874868 ~ 9940435 (+)
G77255 NA non-coding upstream 404610 9922721 ~ 9926110 (+)
G77233 NA non-coding upstream 587620 9741789 ~ 9743100 (+)
G77395 NA non-coding downstream 645165 10977663 ~ 10978504 (+)
G77445 NA non-coding downstream 1022593 11355091 ~ 11355362 (+)
G77517 NA non-coding downstream 1252456 11584954 ~ 11586100 (+)
G77515 NA non-coding downstream 1258720 11591218 ~ 11639790 (+)
G77543 NA non-coding downstream 1409150 11741648 ~ 11743415 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 17234 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 3267986 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 4244914 6059242 ~ 6085806 (+)
AMCG00009915 NA other upstream 4561668 5766337 ~ 5769052 (+)
AMCG00009897 NA other upstream 5082539 5232632 ~ 5248181 (+)
G77423 NA other downstream 817128 11149626 ~ 11155469 (+)
AMCG00010041 NA other downstream 957405 11289903 ~ 11389245 (+)
G77541 NA other downstream 1368208 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 4659421 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 5191948 15524446 ~ 15534087 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G178055 sigmar1,LOC107573076,LOC107653128 non-coding NC_035916.1 CM008319.1 20421369 ~ 20424714 (+)