G77515


Basic Information

Item Value
gene id G77515
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11591218 ~ 11639790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96742
GGATTACGGCCCTGTTTTCCGTCCGGCCAACCTGAATCTCAAAGGTTATGTTGAACTCATCCTCCAAGATCGCAGAGGTGAGATTCCACTTCACAACCAGTGTCTGAGCAGCGCTGTCTTTGTCGAGTCCAATAATGAGTCCAATCTTTTCGATGTATCTGGAAAGCTGGGAGAGTGATGCAGCTTCTGCAAGTTACTGGCAAGACGCGTATTGTGTGCCCTGCAGGAAGCGCCAGTGTGAGAGCTGAGTGTACaaaccacattttaaattatacattttggtTTGACCAAAGAAATCTacagtttttccctttttgacTAATTAGCttttacagtgtttatttcagtgttttgttatgTTGATTATGTTGACACAACTCTTTCTGTGGCCCAGACTCCAGATTTAATGTTCTTTGCACTTTCTAATACAACTGTTCATTTCCATAAGGTTGCAATGCACTTTGGAACCACTGACCTTTTGCCTTACACCAGTACCAGCGATAAGTTATACAGTAAAAGCGAATTATTCTCAGGTTGAAATCGTCAGAAACCTGCATATGTAGCCTAAAATCTAAATTGATATCACATTGCAGCTTAACCTGTAGCCTTAATAACAGATCTCTCTCAGCTGAACCTctacatttcaatttttgttgGTCACAATCTCaagaatttattttgtgttttgcagaacTTTTCCGTGCACTCTTAGCAACATTTGTATGCTGATGAAAGTTCGCAAAACacactttttgtgtgtgagaaACCTAAATAAAGCAGCAAGTCCACATAGAGGAAGCCATATCAGTGACACcacagtaataaaatacaaggTCTAAAAACATTGTAGAtggagcacagagcagagaccAATGATAAAACATTCACTAATGATTGTCCTGTGACATTTCATAAAAGATGTAAACTTTACAAAGGAGAAATGTCACTGCATGACAGGTATTCGTactttttttgtacattataGAATTATCCCCTTTTTCAATCTTAATAGAAATACTCATCATCCAAAAACCTCCATATCCTGTCCTGAATACTTATTCAAAGCAGATAGTATTGTCCAGACGATTGCTCCATGCAACAGTGCTGAagaatattgaatgtatttgttacTCACACTTTAAccatttttcttctgaaaagaaaagcattatgCTCTGAAAGTATTGCAAGAAAATCTTGATTGCAGagtcatgtatttgttttggaaactgAAAAAGGTCAAGTCAACTTAAATGTGTCATTTACTAAGTAAGTAAACATACTAAACTGTAATGTTAAATCAGTGTTTGGTATTTACCTTCTCTAGCACAGCtactgtgaaatatatttagtttttcagtaTACAAAATCAGTCTGAATGTCTGCGTGTCACAAGATGAGATTCCTTCAGGAGTCCGTCATCTCTGTGCTTTGTAAAGCGGCTGTTGGCAAGACCCCATGGAGCCCAAACCTGATTTCCACAGGGACTCTGTAGAAGGTTCCACTTTTAACCTTGTCCCCAACTTCATACAGCTCTTGTGTGGGGTGCCATGAAAGACCAATGAGCTGGAATGATGGAACAATTGGCATTTGTTCAGTTTCCAGCTGAAACAGTCGGTTTGCAAGAGCTTTTACACCATGGAAGACcatttttggaaataataatactagaCATGGAACCATATCCATTAAACTTTTTCCACCACCCTGAGTTAACCCTCTTTATTGTGAACTGTAAAACAGACACTGATACCCAGTCAGCCTACAGTGACTCTTATATTAGCTTCCTGAAGGACTCATCTGAAACCTCAAACTTGGCGGTTGTTCCTGTGTTAGGAAAGAAGAGTAAACTTGCCTGCATCAGATATTTTGTGAATTGGGGCCAAGGACAGGTCTGCTAGCTGGAGGTGTTGTATTGGGAGGAACTGCTTGACAGAAAGGAATACCCAtagagttttgatttgttctacCTACATTTCACCTGTACTTTATTACTATTCTTATAATTACTGCACTGTCTGTAGCATATGTCAGCTAAAGGGTAAaatgtttatgatttcatcttcccatcttttgtgtgtttttctacgTCCTAGCTTCTAGCTTTTTCATCTctttgggatccattcaatagcttcctctgtccatctttgttcttgcagtgtgtccagcccattgccattttaacatttttactctttcaatcatttccttttatttttttatttgtttttggatccattcatttattttccagtctcCTTTTGTTATTCCAGAACTACACTTTGGAAGTCTGCCAGTAAGTTTTGTACACTATATTTTAGATAAAGTGAGGATGTGGATTATTAGGTTATGGAGGTTGCCTCTAAAAGGAATTGTTGGATTTTGATCTTTGAAAGCAAATAGACTGAGGAATTATTTCATCTAACTGCATACAATATTGTGCTTTTGGCATTGCTGACATTTGAACTTCCTATTTAACACCTTCCAGCTTCTGTATTGCACAACAAATAGATTTTAGCATTGGtgtagatttgatttcaatatgTACACTAAGAAAATTGAGATTATTTAGAAACAGTACATGTGTGATACagataaaacatgaaaagtacACTACAtatttggtattttgtttttttattaaataactcTTTGCTCCTgtgaaaaagctttttattgCTACAGAATCATTCAGATTTAGCATATTTGAAACAATTCCTTTTGAAACTGATCTCCATAGCTTATTAcctatccattttatttttttaactttttatttactgttgAAAGGGAATTTATCTGCACATAGTAAaaagtattgctttttaaaatgtatatctgtgtgtgtgtgtgtgtaatatacacacacacacaatatgtaaCATAGCTGATTGTAGATAACACATACTGCACATGTAAACAACACTAATACACTTGATTCCAAATGCACAGCATACTGTTTTGGTGATGATGAGCTTTAAACTTGTCTAGAGGGTAATATctgtccattaataatgaaaattgATATAGAATATTGTATCGTTCCACAAACAGCACTACAGCAATTACTTAGATCTCCTTTTCACAGTACTTCACATGAGTAGAAATGGTGCATGTATGCTTTGATTTGTGATCTGTGGCCTACGTTACCAATTTGGCATTGAAGATATTGCCAGTTTACTCTGTTTGTAATATGCTATTAcatagtattactattattataatatgagTATCTTAAGCAATcaaccaaaacacattttaaagagtaaccatttgaaaatgtgaataGGAGCTGGGtaattttttctttccccaaagCACTTCTCCCCTCATATGCGCAGTTCACAGTGTACCAGATGATGAAATCTTTACTGGAAAAGTATTAATTTCTTACAGCTTTGTCCAAGCATTCATTTGTCATACTAAAATGGGATATTATCAAAGAAACGATGTTTCTGAATTGTCATTAACTGTTACAGTTAGCCTTTGAATTTTATGTACTAATATATGCAATGTAATACTAAAATGTCCATGTTCTTCAAGAGGAAAGAAAgccttaaaattaaaaccatctACCTTCTTAAACTGTACACATGGAaatctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96742 True 3607 lncRNA 0.36 2 11591218 11639790

Neighbor

gene id symbol gene type direction distance location
AMCG00010045 rictor,LOC107681152,LOC107589259 coding upstream 18017 11520239 ~ 11573201 (+)
AMCG00010044 NA coding upstream 74653 11493686 ~ 11516565 (+)
AMCG00010047 NA coding upstream 117274 11471152 ~ 11473944 (+)
AMCG00010050 NA coding upstream 121434 11466925 ~ 11469784 (+)
AMCG00010049 NA coding upstream 125649 11458113 ~ 11465569 (+)
AMCG00010052 NA coding downstream 90690 11730480 ~ 11740511 (+)
AMCG00010054 nup155,LOC106563918 coding downstream 206614 11846404 ~ 11866799 (+)
AMCG00010057 NA coding downstream 232041 11871831 ~ 11907105 (+)
AMCG00010059 NA coding downstream 419985 12059775 ~ 12085063 (+)
AMCG00010063 NA coding downstream 446056 12085846 ~ 12094799 (+)
G77517 NA non-coding upstream 5118 11584954 ~ 11586100 (+)
G77445 NA non-coding upstream 235856 11355091 ~ 11355362 (+)
G77395 NA non-coding upstream 612714 10977663 ~ 10978504 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 1258720 10330720 ~ 10332498 (+)
G77346 NA non-coding upstream 1275120 10315346 ~ 10316098 (+)
G77543 NA non-coding downstream 101858 11741648 ~ 11743415 (+)
G77621 NA non-coding downstream 385031 12024821 ~ 12025152 (+)
G77661 NA non-coding downstream 509141 12148931 ~ 12152321 (+)
G77669 NA non-coding downstream 530308 12170098 ~ 12171321 (+)
G77670 NA non-coding downstream 537438 12177228 ~ 12177489 (+)
AMCG00010041 NA other upstream 201973 11289903 ~ 11389245 (+)
G77423 NA other upstream 435749 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 1277732 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 4528484 7042597 ~ 7062734 (+)
AMCG00009929 sv2c,LOC107755746,LOC107748435,LOC107565680 other upstream 5505412 6059242 ~ 6085806 (+)
G77541 NA other downstream 60916 11700706 ~ 11701081 (+)
AMCG00010101 NA other downstream 3352129 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 3884656 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 3988555 15628345 ~ 15642841 (+)
G78198 NA other downstream 4417741 16057531 ~ 16060087 (+)

Expression


Co-expression Network