G77543


Basic Information

Item Value
gene id G77543
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11741648 ~ 11743415 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96772
CTTGAATGGTGCCaaagtggaaaatgtgtttctatatataaaaattgtTTGCATGATGCTGGGAACATGACTTCAAGGGTGTGTAACAGTTGAAACTTGAGTGaatacaaagcaaacaaacaaatcactaaCTTTACCTTTTTTTTAGACAAGTATAtctcaatgttaaaatgttagtGCATGTCATGTCTAATATCGGGCTACCCATTACGCCTCTTAACAGTATAATATGAAAAGATTTGGGAAGAGTGGTCTTAACTTTTAAGAAGTTATTGCCCTTAATATTTGTGAACTGCTGTCTGTAATGCATTACAGAATATGTTGTGAAGAGCCACAGCTCAGAAAGTCCAGTCTGAGCGATACTGAAATTGTGCCTACCAACAGACAGTTTAAGGCTAATCAATTACGTCTTTTGGGAATGAGAAATTAGCTCTGTGTCAAAGAGCAGAATAGGAATGCTTAAAAAAAGCAGTAGTAAAATGAGTATTGATAGGTCTTGATAGGACTAACTTTGACATTTGCTTTCTCACAACTCTGGTGTTTTAGAAGGAATCCATAATCGTGCTCACACAAGGTTAGCTGCCTCATTTTGACATATTCCTTTTGAAATCAACAACATAAAATTATGAGAAGgaaacttgattttttttcccatgtaaaaaaagaacactgtgtatgggtttaattttgtatcttATCACACAGGTATTAAAATATCAAGGGCTTTGAACTGTTAATTCTCCCAGTATGTGGTTTCAAAAGTCCAGAAGAAAACTCTAGCAAGTAATGCAATTTCAGGATCCTATTGATGATTTGGTTATCCTTAGTGTTCGATGGAGCAAAAACTGCTGTAGCTCAAAAAGGAGAAAACTTAGAAATGTGTGAATGAAGGGACACTCTGGCAGTTGTACAGAAgatatatttaaagtgtttgcCCTGTTGGACCTACCACAAGACCAATTCAAAGTCATGTCAAGCTCTCCCTAGTTTAGATCCACATATACAATTCCACGTGATAGAAATAGCAAGGCAACGCCACTTCAGTTTAGGTGTTTGATCACAATACGCTGTACCATTTGTACGTTTAAGACAGTGTTAGAAACTAGAGATGTGGTTAAGATCTTGATTTTCCACAGGCTGAACACCTGCAGCGTAGTAAAGATGCCAACCTCACCACAAACACGATTCTGGTAGAAGAGATCCCTGCCAGTTATGCGTTAGAGCTGTACCTCTGTGGCTTAAAGCATAGGAATAAGAGGGAGACAGCCTCAGGCAAATCCCatatatatacaagtaaaaTCCTAGCTGAACAGTAGCCAAAAACCTCATTATTTTCAGCTAATTTTAATGAATGGGGACATCGGctttaaaacaagaaactgaGCAAAAACAGGAAGGAAACTGATTGGGgagtaaacaaatcaaattgcTTTGACTTTTAAATCCTCCTCTCGTGCGTAAAAAACCACACACCCGAGGGCAACATTAATGTGGCGTGTGATGTCCTCCCGTCAGCCAGCGCTGTTCttatattgtatgtttgtattggTATGTTTTGATCTTGTGTCTGTCCTGAGTGTTGCTATGTTCTAGTGAGTGAAGTGTGTTGAGCTTTGGACAATTATTGCGTAAtaagctataaaaaaaaaaaaaaaaaaaaaaaaaaaaggtaaagttGTGATTTCTGACTGAGCAGCTGAGTAACAGAAGAATATTTTTCCCACAAGCGATGTGTATCACCTCCCGCAAACCTAATGTCTCACTCATT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation

RNA

RNA id representative length rna type GC content exon number start site end site
TU96772 True 1768 lncRNA 0.37 1 11741648 11743415

Neighbor

gene id symbol gene type direction distance location
AMCG00010052 NA coding upstream 1137 11730480 ~ 11740511 (+)
AMCG00010046 NA coding upstream 105479 11620150 ~ 11636169 (+)
AMCG00010045 rictor,LOC107681152,LOC107589259 coding upstream 168447 11520239 ~ 11573201 (+)
AMCG00010044 NA coding upstream 225083 11493686 ~ 11516565 (+)
AMCG00010047 NA coding upstream 267704 11471152 ~ 11473944 (+)
AMCG00010054 nup155,LOC106563918 coding downstream 102989 11846404 ~ 11866799 (+)
AMCG00010057 NA coding downstream 128416 11871831 ~ 11907105 (+)
AMCG00010059 NA coding downstream 316360 12059775 ~ 12085063 (+)
AMCG00010063 NA coding downstream 342431 12085846 ~ 12094799 (+)
AMCG00010061 lmbrd2,LOC106568164 coding downstream 364146 12107561 ~ 12116515 (+)
G77515 NA non-coding upstream 101858 11591218 ~ 11639790 (+)
G77517 NA non-coding upstream 155548 11584954 ~ 11586100 (+)
G77445 NA non-coding upstream 386286 11355091 ~ 11355362 (+)
G77395 NA non-coding upstream 763144 10977663 ~ 10978504 (+)
G77349 sigmar1,LOC107573076 non-coding upstream 1409150 10330720 ~ 10332498 (+)
G77621 NA non-coding downstream 281406 12024821 ~ 12025152 (+)
G77661 NA non-coding downstream 405516 12148931 ~ 12152321 (+)
G77669 NA non-coding downstream 426683 12170098 ~ 12171321 (+)
G77670 NA non-coding downstream 433813 12177228 ~ 12177489 (+)
G77673 NA non-coding downstream 465598 12209013 ~ 12214521 (+)
G77541 NA other upstream 40567 11700706 ~ 11701081 (+)
AMCG00010041 NA other upstream 352403 11289903 ~ 11389245 (+)
G77423 NA other upstream 586179 11149626 ~ 11155469 (+)
AMCG00010021 hdhd2,ier3ip1,LOC107743237,LOC107738843,LOC102780036,LOC106633120,LOC103397450,LOC106527492 other upstream 1428162 10302926 ~ 10313486 (+)
AMCG00009959 NA other upstream 4678914 7042597 ~ 7062734 (+)
AMCG00010101 NA other downstream 3248504 14991919 ~ 15032181 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other downstream 3781031 15524446 ~ 15534087 (+)
AMCG00010119 NA other downstream 3884930 15628345 ~ 15642841 (+)
G78198 NA other downstream 4314116 16057531 ~ 16060087 (+)
AMCG00010144 adamts3,LOC103134868 other downstream 4722149 16465564 ~ 16547620 (+)

Expression


Co-expression Network