G78127


Basic Information

Item Value
gene id G78127
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 15720179 ~ 15723894 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU97476
ATTCAGTACGTTATCGCTTTATTATAAGGCATAACTGAATGTCATACAATTTTTCTGAATACAAATTGTTATACAGATGTATGAAGTAGTGTCAATAAATCTATAAATTCCAGTTTATTGCAAAGACTAGATGGTAAAATTCACTGTTACACAACATCCAGGAAAAAGGGGTAGTGCACAgaagatatatacatacagaagaACAAGCTTATTTTGATTTCCAGTCAGAGTTTTAATAACTCTATAATTGATTTATAACAAGTGGGCATTGATCTATGAATCCCATTCAAAAGGAATTTAAGGCAGTCATTAAACTGTCTATTAGATTGGTTTGTGCTTTAAGTTAAAGCCATCGAGAATCATGTCGGAACCTAAATATCAAAACCATGAGAAATATAGGCTGTGCAGAAAACTATTCTTAAGGTGAAGCGAAGAATAACCAGTGATGCAGTGCCAATAGTTTGAGTCTTATTGAATCACATACAATCTATGCCATCACACAGATCAGAATACATTGAGCAAAACCACCTAAAAGGAGTCTTGAAAAGGTTTTCCTGGAACAAAATTAGGTTGCCAGCATCACCCAATTATGGCTGCATTTATCTGTCCAAAGTTAATGTGCATACATAAAGTGTACACTCCTGAGAGATGATTTGACAAGGAAAGCATTTAAAGCCATTAAGCTTAAATCAGTAGGATTTCATCAAATTATACCTacacataaattaatatataatgccTAACAAAACTGAAGTGTTGATAAACTTGTGGTATCAGTATTTCTAAAGTGACTAAATGCCTAGGTGACAAAGTTGCCTGTATCACTTGgttgaattaaattgtgtttgtgcaatgaaggcacagatcatttgaaaagaaagacatGCACATTAGGTACTAGACCCTCAGGAAAGAGAAGGATTGAATGCAGTTAAAGCTCAAAAGTGACTTTTATTCCTGAAACATTTGGCTGGATTTTAGATGCATACAAAAAGGACAACAGCACATTGGGGCACTAGCTCAGCATCGGATAACTTGCATTCATCATCGTGGTCTGAAAGGGTGCCATTGACCCTCTTCGATATCAAGCACATGCATACGTTTGTAAGCAAACATTCCTTGTAAGCACCAATTTAAGGGCAGCACAATCGTGACCGTGTACAGGCTTCAAAACCAACGCAGATAGcttaattttcaaattattgtgacatgcatttaaaaaataaagaacacattatgacaaaaaacaaagctcTTCCAAATCCATAAACTACAATTCATTAATCTTGTGTATGTGATTCAGTAAGCGTGGAACGGAGTGACATGAATTCAGTGGAACACGAGCTATTGAGATGAAAGATCTGGAGGATGCTGTAGGAACAGGACATCAAAACTCCTGGACATGATGTGCTTAACAAGTAAACATGGGACTTCCCAATGTTCGGAGGCCTTCCTGAGGGGAACCAAAAAAACAAGGATACTAACGAAGATGGCAAGGCAAGGTGATGTTCATGCAAATGGGTTGCCTAAAGGCGCTCCAAACAGATCGGACGTAGCCGGCTGCTGGGCTGGGCTCTGAGAGGGGGAGGTGCTCCAAAAGGGTCGGACCCAAAAGCATCATCAAAGATGTTCTGTGGAGGATTGGCAACAGGAGGGGTCTGGCGGGGGGCAGGTTTTGGTGGCTCTGGGGGGGGAAAAGATAAAAATGATTATGGGAGGAGATTCTCTATGCTactgcacattttattataagCAGCTATGGAGTGAATGATCACTAACAGGCAGGGTAGACGGATCTTCAATGAACCCAGATAGAATTCTAAGTGACTGAAGGAATACAGGGTCTGATCCCCTCCAGTACCAAGCCATCTTCTCCGGTATACTgcttattttaaagcatgtttaAGAGTGTGGTGGTGTTGACAAACATGCTGACCAAATGTACTTGATGCATGCATCTCCTGGGCTGTACAGCACTTACCATTGTGCACTTTATTTAGCTATGCTTTCCTATGCTCCCTTGCAAGGGCTGAATAAGGGAGTCTGCCAGTAAATATGTTTAGTGCACACACACTAAAAAGATGATTAGGTCATGCTATGGAGAGTTAAGATTTCCTCTTCCAGTAATGCTGATGCAGTTTCTCTAGCGCAGCAGCCGGTGTGTGTCCCAGCTGCAataggggcggggggggggggaacagaaAATGTAGCAGGATTTTTTGGCATGGTTCTTGttggaattaaaaacaagaaactgaagaaaactacagaataatTTATATGGAAggttagaaaacaaaaacaggaaacaaacctactaaaactaaaatggacACAAAAGATAACAGATTTAAGTTGGGGTTAAAAGCAGGTAGGTCTCAAGAcgcatttaaaatgcaaatcacacAGCTCGAGTTAGACACTCAAATCAGTTCAGGGAGCTTTCTACAcatttgtcaaatgtattaaagtgAGTTAGATTAGAAATCAGATGTGCTTCTAACAAATCACAAGGTTAGGTTTTTTACCATTGATTTTGGCCGATATCTGATTGATATCAAAGTCATCGTGATCAGCAGCATCCTGGGCTAGGCCCACCCTGCTGGAGAAATACTGGGAGAAGGCTCCAGTGGTGCTCACGCCCGGCTGCTGCTCACCCCTCCTGGCTGGCACGGCGGGGGGCTTGGCCATCTGGAAGTCCTTGAACATATCCTTCACATTCTTCTGCTCCTTCTCCCctagagggtccagggcactgAAAGCACTGTTCTCCACTTTCGGGGCTTCTTTCAGGGGCGCTGGCCGAGGcgggggctgggggggagggCTCATCTGCTGGAGCCCTGGCATGAGCCCTGGGGAGGCACCAGGAAACATGCTGGCCTGGAAGGGGTTTGAGAAGTTGGAAGGCTGAGGCCAGGCtgcagggggggtgggggctggcGTCTGACCCCAGGCTGGAGGCTGAGGTACAGGGGCCACCCCGAAAGGCGATGGCTGCCCCCAACCAGGGACTGGGGAGACCCCAAAGGCTGCGGGCTGGCCAAAAGCAGGTGGTTGAGGACCCCCTATTGACCCCTGTGGCAGAGCACCAGTGTTGAACATAGGTGTGGGGGGCGATCTCCATGGTCCTGCTCCTGGTGGGGGGGCTATCTGAGCTCCTAGTGCCAAGGCTc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97476 True 3176 lncRNA 0.44 3 15720179 15723894

Neighbor

gene id symbol gene type direction distance location
AMCG00010124 NA coding upstream 10673 15700099 ~ 15709506 (+)
AMCG00010117 gldc coding upstream 162002 15534997 ~ 15558177 (+)
AMCG00010115 NA coding upstream 205484 15492623 ~ 15514695 (+)
AMCG00010111 LOC107735115 coding upstream 277252 15439991 ~ 15442927 (+)
AMCG00010110 NA coding upstream 502633 15212005 ~ 15217546 (+)
AMCG00010125 NA coding downstream 24231 15748125 ~ 15800521 (+)
AMCG00010127 tmem8b,si:dkey-84j12.1 coding downstream 166564 15890458 ~ 15912424 (+)
AMCG00010134 NA coding downstream 218715 15942609 ~ 15943250 (+)
AMCG00010128 tars,LOC107700064,LOC108255896,LOC107727452,LOC107755726 coding downstream 247990 15971884 ~ 15984826 (+)
AMCG00010126 NA coding downstream 262281 15986175 ~ 15988477 (+)
G78100 NA non-coding upstream 65536 15653988 ~ 15654643 (+)
G78032 NA non-coding upstream 411533 15307050 ~ 15308646 (+)
G78012 NA non-coding upstream 487980 15228893 ~ 15232199 (+)
G78007 NA non-coding upstream 498524 15204674 ~ 15221655 (+)
G77954 NA non-coding upstream 672324 15004034 ~ 15047855 (+)
G78129 NA non-coding downstream 5246 15729140 ~ 15735727 (+)
G78299 NA non-coding downstream 948592 16672486 ~ 16672909 (+)
G78300 NA non-coding downstream 950215 16674109 ~ 16674619 (+)
G78302 NA non-coding downstream 959023 16682917 ~ 16683174 (+)
G78303 NA non-coding downstream 964891 16688785 ~ 16689872 (+)
AMCG00010119 NA other upstream 77338 15628345 ~ 15642841 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other upstream 186092 15524446 ~ 15534087 (+)
AMCG00010101 NA other upstream 687998 14991919 ~ 15032181 (+)
G77541 NA other upstream 4019098 11700706 ~ 11701081 (+)
AMCG00010041 NA other upstream 4330934 11289903 ~ 11389245 (+)
G78198 NA other downstream 333637 16057531 ~ 16060087 (+)
AMCG00010144 adamts3,LOC103134868 other downstream 741670 16465564 ~ 16547620 (+)
AMCG00010164 NA other downstream 1496142 17220036 ~ 17225340 (+)
AMCG00010160 NA other downstream 1521691 17245585 ~ 17247150 (+)
G78396 NA other downstream 1550493 17274387 ~ 17277998 (+)

Expression


Co-expression Network