G78299


Basic Information

Item Value
gene id G78299
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 16672486 ~ 16672909 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU97689
tattttgaattgtccctttactggaaaccttatagattgtgtgaatgtcaactactgtccatgtgatagagatgccttttataaggaggatctctgatgttgtgcgAACCACAtattgtgtcttcagatgaccgatttattccacatggcagatatgcacattatgaatcgTGTCCTGAAGGAACCGATGTCTGACCCGTAGTGGCAGAGGTGCATATGGAGAAGACGCTGGTGTTCTCcttgagacacagtaggccgaGGGCGCGGCTTTAAAGACATCTTGAACATCTTGAAAGGCATCTTGAACAGACCAATGTTGAGGTCCACAACGCTGAAGTGATGCTTGacttaatggagaaataagttaaaatactgaaattaaaggTTGTCCAGATTATAGGAATctgcaatacattgtgaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97689 True 424 lncRNA 0.42 1 16672486 16672909

Neighbor

gene id symbol gene type direction distance location
AMCG00010145 NA coding upstream 218030 16420684 ~ 16454456 (+)
AMCG00010139 NA coding upstream 319382 16348742 ~ 16353104 (+)
AMCG00010140 NA coding upstream 332905 16335141 ~ 16339581 (+)
AMCG00010141 NA coding upstream 339009 16307230 ~ 16333477 (+)
AMCG00010138 kank1 coding upstream 372892 16284949 ~ 16299594 (+)
AMCG00010151 NA coding downstream 49535 16722444 ~ 16732279 (+)
AMCG00010154 NA coding downstream 84893 16757802 ~ 16761758 (+)
AMCG00010153 NA coding downstream 96673 16769582 ~ 16774715 (+)
AMCG00010163 NA coding downstream 514520 17187429 ~ 17193350 (+)
AMCG00010168 NA coding downstream 578338 17251247 ~ 17261003 (+)
G78129 NA non-coding upstream 936759 15729140 ~ 15735727 (+)
G78127 NA non-coding upstream 948592 15720179 ~ 15723894 (+)
G78100 NA non-coding upstream 1017843 15653988 ~ 15654643 (+)
G78032 NA non-coding upstream 1363840 15307050 ~ 15308646 (+)
G78012 NA non-coding upstream 1440287 15228893 ~ 15232199 (+)
G78300 NA non-coding downstream 1200 16674109 ~ 16674619 (+)
G78302 NA non-coding downstream 10008 16682917 ~ 16683174 (+)
G78303 NA non-coding downstream 15876 16688785 ~ 16689872 (+)
G78316 NA non-coding downstream 219320 16892229 ~ 16892600 (+)
G78334 NA non-coding downstream 381964 17054873 ~ 17062912 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 124866 16465564 ~ 16547620 (+)
G78198 NA other upstream 612399 16057531 ~ 16060087 (+)
AMCG00010119 NA other upstream 1029645 15628345 ~ 15642841 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other upstream 1138399 15524446 ~ 15534087 (+)
AMCG00010101 NA other upstream 1640305 14991919 ~ 15032181 (+)
AMCG00010164 NA other downstream 547127 17220036 ~ 17225340 (+)
AMCG00010160 NA other downstream 572676 17245585 ~ 17247150 (+)
G78396 NA other downstream 601478 17274387 ~ 17277998 (+)
G78410 NA other downstream 671510 17344419 ~ 17353488 (+)
G78743 NA other downstream 2247002 18919911 ~ 18921444 (+)

Expression


Co-expression Network