G78385


Basic Information

Item Value
gene id G78385
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17239050 ~ 17241485 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU97789
TCTTTGGTCATCGCATCCTTCCTGTATAAATACCACAGAGACTTGTATCTTTTCACAACATCTTAAAGCTTAGAGAAACCTCAAAAGCAACAGAcggaaaaaaatgaagacagcTGTTTTATTCGTTCTTGCCGTTCTCCTTTTTGCAGATGTCAaaggagtacCGTTTGCTGGAAGGAACCGGTGTCTGTGCATGGGTCCTGGAGTGACTTTCATTATGCCAAAGCGCATCCAGAAAGTCGAAGTGTTTCCAGCCTCCCCGACGTGCGGCCTTGTGGAGATTGTcattactcTGAAAGAAAGTGGAGAGAAGAGGTGTTTGAATCCAGACTCAAAGTTTGCCAGGAGCATTAAGAATTCATTGGAACACAGGTCTTCACAGAAACGGGCATAGAAACGCCACAACCTGATCTGCAATTATAAAGGTCTCCAGCATCCTGCTCCTCAAAGAAATATCGGCCCTGTCAACAACTAAAATTAATTCCATACTGCAACagatataatgtatttattgagtataaaaaaacagaaaattccAAAAAGCTGTGACCAgcaaagattattttaaatatcaaaaactgtgaatatacaatacaataattttttTGACTAAAAgtgataaattattaatttatattatatgcaTTCCAGATTTTATGTAAAGtgtaaaagtacaaaaacattGGTAGAGTaagttttgtaaatatttgatttcaattattgtgtgtgctgttgtaataaattgtattgttattttattgtgtaagtCCAGGATGTATTTGTGTTGCACAAAAGTAAATGTTAgacttattaatacaaaaaatcttgtttgtaaataaaattattttcctaaacaaaataaaatgtctttaagATC

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

RNA

RNA id representative length rna type GC content exon number start site end site
TU97789 True 877 lncRNA 0.34 4 17239050 17241485

Neighbor

gene id symbol gene type direction distance location
AMCG00010163 NA coding upstream 45700 17187429 ~ 17193350 (+)
AMCG00010153 NA coding upstream 464335 16769582 ~ 16774715 (+)
AMCG00010154 NA coding upstream 477292 16757802 ~ 16761758 (+)
AMCG00010151 NA coding upstream 506771 16722444 ~ 16732279 (+)
AMCG00010145 NA coding upstream 784594 16420684 ~ 16454456 (+)
AMCG00010168 NA coding downstream 9762 17251247 ~ 17261003 (+)
AMCG00010162 NA coding downstream 52582 17294067 ~ 17303416 (+)
AMCG00010161 NA coding downstream 63495 17304980 ~ 17311881 (+)
AMCG00010167 NA coding downstream 74060 17315545 ~ 17317008 (+)
AMCG00010166 NA coding downstream 75688 17317173 ~ 17334410 (+)
G78381 NA non-coding upstream 10205 17226891 ~ 17228845 (+)
G78334 NA non-coding upstream 176138 17054873 ~ 17062912 (+)
G78316 NA non-coding upstream 346450 16892229 ~ 16892600 (+)
G78303 NA non-coding upstream 549178 16688785 ~ 16689872 (+)
G78302 NA non-coding upstream 555876 16682917 ~ 16683174 (+)
G78392 NA non-coding downstream 13737 17255222 ~ 17255429 (+)
G78529 NA non-coding downstream 278782 17520267 ~ 17520854 (+)
G78546 NA non-coding downstream 552955 17794440 ~ 17845546 (+)
G78607 NA non-coding downstream 734689 17976174 ~ 17977305 (+)
G78635 NA non-coding downstream 817234 18058719 ~ 18077267 (+)
AMCG00010164 NA other upstream 13710 17220036 ~ 17225340 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 691430 16465564 ~ 16547620 (+)
G78198 NA other upstream 1178963 16057531 ~ 16060087 (+)
AMCG00010119 NA other upstream 1596209 15628345 ~ 15642841 (+)
AMCG00010116 LOC104924827,LOC102229495,LOC106923526,LOC105930787,LOC102305543 other upstream 1704963 15524446 ~ 15534087 (+)
AMCG00010160 NA other downstream 4100 17245585 ~ 17247150 (+)
G78396 NA other downstream 32902 17274387 ~ 17277998 (+)
G78410 NA other downstream 102934 17344419 ~ 17353488 (+)
G78743 NA other downstream 1678426 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 1845844 19087329 ~ 19087754 (+)

Expression


Co-expression Network