G78546


Basic Information

Item Value
gene id G78546
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17794440 ~ 17845546 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU98002
taaataataatgatNNNNNNNAACAAACAagtacaaacacatacaaagtAAAGTACATatcttaaaacaacaaacaaaacaatatataaaaaaaagctttgaaaaaacTTAATCAATTCATCAatttaatacattgtatttgaGCTTAGCTGCTTTGCTACTGTCGTTGAAGACACTGAATTGAGCAGGGTATAGCATTCTGCCATATTGCTTTATAAGGTATTAAAGACtcagaagataaaaaaaaaatgtaactgctattcttaaagaagaataaaaaaacacattcttgtgAAACGTAAAGATTCATAACATTTTCTCTGTGGAGCCTTGATTAATGTGTCCTACCTTCCAAAATGCTATTTTAAAAGAAGAACaagttttgtttggttttgttttgactttCTCCATTAGTAATAGTCATAGGCAGTgtgttaaactgtattttatgaGAGACTTTACACATCTGACACCTGATCTTTTGCTTATTTTAGTCCTTCACAGTGTGAATTCACATCAATTATCAATATTTGTGTTTGCTAACTAAAATAAAGGACAGCTGAAGAAACAATGTTGATACTAAAATATGTTTACTGCTTAAGTCATAAAACACGAAAACCatgcatttttgtatgtatatgaaattaatacagtgctgattaatatttataaatgtttaaaaaagaaaattcagtggttcaattaaacttcagttaattaaattcatGCCTTACTTTTCCCCTTTCCTGAACTAATTGTAAATGcattgcttctgaaaataataaaatcctttCACTCAACACGTATTCAATTATCACATATATGGTCAAAGGAGAATTTTAAAAGCTTATCATAACTTCTGTATGGTACTCCATGCTATTACATGGAGTGTGCCTTAAATTCCTACTTCTCGATGGGAAATTCACCTAATTACTTCATTCTGGCCTGTTCGCACATCCTGTTTATTACTAGATGCACATTTGTCCATTGCTGGCATAGTTTTAAAGTGTTTGGAAATTGTACTACTCATGctgtaaatgtgtgaaataatgAATAGATAGAAAAGTAGGAATAATTCACAATGAATCTGATTTGTGCTTTGCAGGCTAATATAcagtcataaaacattaaacccggtcccaaccccccacccccctcagtTAACTTGGTCCTGGAAACAACAACTATCAGTTGAGACTGACTGCAATAAAATGCATCACCActtgatgattattattgttttaaaaaaatgaatcccACTCTCCCTTCTGGAATATTGAATGCCGAACAGTAAACTGGAAAATCACAAGTTTTACGTCCTCTACTTTCCATAACAGCATTGACAACTTTTGTTCAATATATatagtgcatttgtttttgtaatatcacattttaatgGTCATTTGTTCCCCTCCCAAATCCAGTGACCTTCTGTGAGTTTATGAAGGTCTCTCTTCAAGCTTTCTACTTTCCCCGCCTCAGGCTATGGCACCTTTTAGgcTGAAGTTCTTGGTCCTGCACATGGCCCATCTCGAGTCCACCTTGATCTTCAGATCCTTCACCCAGGCTAGTCCAGTTGGGGCACACAGTCTCAGTTCACCCTTGGTAATGAAgctgaTGCACTAATGTCACAGCCGTCACCAACTTTTTGACTCATGTAGGTTCTCACCACGTGGAGGGGGATGGGCTTGTCACTGACCCTCAGGCAACAGTCTTTTGCCATGTTGATGTCTCCTTGAGCAGAAGATGAGGAATGTGGAGATGCAGACAGATGTGATGCTGGAAGCCATGGTGGTATCAGCTGTTATCTTCTTGACaaggatggagagagaaagcTCTTGCTGCTGGACTCTTTACAATCTCCAAGCCTTGCTGAAGCTCCAGTGCACTGCTGTCTGCTGAGAGATGGCATCTTCCCTTTATGCCCAGATGTGGTTTCATTATGATACATGTAGGAAGTCCAGccctcctcccctccacccctcctttttttccctgaatgttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98002 True 2013 lncRNA 0.36 6 17794440 17845546

Neighbor

gene id symbol gene type direction distance location
AMCG00010185 NA coding upstream 19753 17739134 ~ 17774687 (+)
AMCG00010186 NA coding upstream 69566 17713115 ~ 17724874 (+)
AMCG00010187 LOC107713368,LOC106565090 coding upstream 92939 17666736 ~ 17701501 (+)
AMCG00010176 NA coding upstream 329351 17455468 ~ 17465089 (+)
AMCG00010177 gtf2h2c,LOC100196672,LOC103032811 coding upstream 354093 17434441 ~ 17440347 (+)
AMCG00010191 NA coding downstream 99686 17945232 ~ 17954544 (+)
AMCG00010193 NA coding downstream 123664 17969210 ~ 17973694 (+)
AMCG00010194 NA coding downstream 145242 17990788 ~ 17995377 (+)
AMCG00010197 NA coding downstream 160673 18006219 ~ 18009050 (+)
AMCG00010192 NA coding downstream 176146 18021692 ~ 18034151 (+)
G78529 NA non-coding upstream 273586 17520267 ~ 17520854 (+)
G78392 NA non-coding upstream 539011 17255222 ~ 17255429 (+)
G78385 NA non-coding upstream 552955 17239050 ~ 17241485 (+)
G78381 NA non-coding upstream 565595 17226891 ~ 17228845 (+)
G78334 NA non-coding upstream 731528 17054873 ~ 17062912 (+)
G78607 NA non-coding downstream 130628 17976174 ~ 17977305 (+)
G78635 NA non-coding downstream 213173 18058719 ~ 18077267 (+)
G78682 NA non-coding downstream 604944 18450490 ~ 18450809 (+)
G78758 NA non-coding downstream 1117977 18963523 ~ 18963725 (+)
G78760 NA non-coding downstream 1125749 18971295 ~ 18971714 (+)
G78410 NA other upstream 440952 17344419 ~ 17353488 (+)
G78396 NA other upstream 516442 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 547290 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 569100 17220036 ~ 17225340 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 1246820 16465564 ~ 16547620 (+)
G78743 NA other downstream 1074365 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 1241783 19087329 ~ 19087754 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 1292457 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 1759072 19604618 ~ 19629439 (+)
G79382 NA other downstream 4200572 22046118 ~ 22047542 (+)

Expression


Co-expression Network