G78607


Basic Information

Item Value
gene id G78607
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17976174 ~ 17977305 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU98069
TGGTTATTATTGAGGGTTAACAATtttctatgcattttatttgtcatttttttactGCTTTTAGTTTAGGACAAACTACTAATTTCTCcctagttttcattttaatcagaCCGATACAGCATTTTAGGCAGAGTTTTACTATTAATGGACTAtcaagatttgatttaaaagcCTGCAGTTCAAGTGGAAAATTTACACCTTTCTCTAAGTTCGACTAAACTCCACCTAGATTTCCCAAAAAATGTGCCACGATCACAAAAGTGGGTTATCATTCCAGGAATAGtcactttgtgtttgttttcgaGGTTTAtcaagcattatttatttatagcgCACAGTACTAGAACCTTTCTGAAATCTGATGAAATGTTGTTGGTTCATGGGTTAAACATTAAATGCCAAGACCTACCTTAGAGTAGCATTTCCACCCGGCTCGTTCTTTATCCTCTGATGCAGAATGTTAATACCACATGCTCCATGTTAGGCCATTTATCTGTGAAGTCTTTGGATGCAGTGCTTTAGTAAATGGCTGTAGAGGTTTCTTCTTTTGCTGCTGGCAGGCCTTGCAGATTGGGGGGGTATTTGGCATTTCCAGAGCATGACAACATTTTCCGTTTGAAGAAACCCAGAATCAGTCAAACAGTAGAAAGTCAAAcctctttttccttttatcaAGCATTTCAGATAAAAGCTTGACACTTAGGGTCCTGCATTTTGCATGACTTGGCTTTTTAAACTCAATCTCTCATGCAAAATGCAGGGCTCCAGATATAccaacagtttaaaatgtttgtctgGACAAAGAAGCACGACTTCAAAATGGACTTCTGCAAAGTTTCTAGGGAAGACTCAGATGGCATTGACCCCTCAACAGCTCAGCCACTGCTTCACTCCAGAGCGCACTGTTTAATCAACTCCTGCTATGTATTTACAGTGACAATTTATTAACTGCCATGTACTGTTCTCAGctaaagtgaaatatatttgatagAAACTGCATCCTGGGTATAATGATAGTGTGACACCTGCTATGTATTCTTGACACGTTCATACAATATGTCATGACAAACCGAAATGTGCGGGAATGCAGCATcggttaaaaatgtaataaaaacgtACTTTAAATCCTAAA

Function

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98069 True 1132 lncRNA 0.38 1 17976174 17977305

Neighbor

gene id symbol gene type direction distance location
AMCG00010193 NA coding upstream 2480 17969210 ~ 17973694 (+)
AMCG00010191 NA coding upstream 21630 17945232 ~ 17954544 (+)
AMCG00010184 rusc2,LOC107595920 coding upstream 154996 17800723 ~ 17821178 (+)
AMCG00010185 NA coding upstream 201487 17739134 ~ 17774687 (+)
AMCG00010186 NA coding upstream 251300 17713115 ~ 17724874 (+)
AMCG00010194 NA coding downstream 13483 17990788 ~ 17995377 (+)
AMCG00010197 NA coding downstream 28914 18006219 ~ 18009050 (+)
AMCG00010192 NA coding downstream 44387 18021692 ~ 18034151 (+)
AMCG00010200 NA coding downstream 193365 18170670 ~ 18177842 (+)
AMCG00010199 NA coding downstream 210873 18188178 ~ 18202438 (+)
G78546 NA non-coding upstream 130628 17794440 ~ 17845546 (+)
G78529 NA non-coding upstream 455320 17520267 ~ 17520854 (+)
G78392 NA non-coding upstream 720745 17255222 ~ 17255429 (+)
G78385 NA non-coding upstream 734689 17239050 ~ 17241485 (+)
G78381 NA non-coding upstream 747329 17226891 ~ 17228845 (+)
G78635 NA non-coding downstream 81414 18058719 ~ 18077267 (+)
G78682 NA non-coding downstream 473185 18450490 ~ 18450809 (+)
G78758 NA non-coding downstream 986218 18963523 ~ 18963725 (+)
G78760 NA non-coding downstream 993990 18971295 ~ 18971714 (+)
G78772 NA non-coding downstream 1028984 19006289 ~ 19010099 (+)
G78410 NA other upstream 622686 17344419 ~ 17353488 (+)
G78396 NA other upstream 698176 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 729024 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 750834 17220036 ~ 17225340 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 1428554 16465564 ~ 16547620 (+)
G78743 NA other downstream 942606 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 1110024 19087329 ~ 19087754 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 1160698 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 1627313 19604618 ~ 19629439 (+)
G79382 NA other downstream 4068813 22046118 ~ 22047542 (+)

Expression


Co-expression Network