G78635


Basic Information

Item Value
gene id G78635
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18058719 ~ 18077267 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU98099
CAACGAAATTGATAGAGACACCTACGTTTTAGGGTCATGCCTGCCTTTCTTTAATAAAGGCGGGGTCTaagcttttattttcttggacTGGGGCAATACATGCATTGTCTCCTGTATTGATTTACAAACGAGTGTTTAACAGGGTTGCTGTCTTTACCAAGGATCGTCCAATGTCAGTAGTGCACAAAAAGTCGATTAATCAAGTTCAGCTAGTTCACCGGTCGGGCGCTGCCTCTGATCGTGTACCTCCACACAACAAGCGGCTTCAAAGACCTGATGCTCCGTCTGCGCAAAACTTAAAAATCGCCTTTATTCGGTGTCCCTGTGTGTTACACTTCACAGCCCCACTGGCCAGTGCCGCACTTTTGCTTGTGGTGCTATAAAACCACGCATTGCCATTCAAACTtgtggatctctctctctccctccctccctccctccctccttctctatTGACAACGGGAATGCCAGTGCGCTTCGCCCAATGAGGCAGAGCCGCACACACCCGCAAAGACGGACACAAGATGTGCACTGATGGATTGACAGCAGAAGCCCTGGATTGCAACAATCATTTGAACCGCTGtctgccttttgttttgtattggcCGCTGGATCTTTCCATCAGGGATCGTGAATGTGGATGCAAGGACCACCTAGATCGGAATTGTAGTTATTGAAGAGGATTGGCGGTTGCTTTCTCAGATGCCATCTCGTCGGCAGAATTAAAAGGGGATaagtACAAAGAGGCACTGTCTTCAGCACAGAAGGGGAAGCACAGCTGCCCTGACCATTCCTCTGTagcttcattcattcatctatTTGGTCTATAAGCTGGGATAAAAGTcaaaagcagaacatttttgTGGGCTCCCTCCAGAGTACAGGGATGAGAAAATAATGCTTTGATTGAAGCCTGTGCAGAATATGTCCTAGAGCAAAGTTCGTGAATGGTTATGCAACTAAGAGCCACATGGTTTCCTTCATGGTCGACAATTGTACATGCAGTTGTACAGCCCAAGAACATCCAGAATACACTGACCAGGAAGTATAGAAATACACAAAGGAAAGAGACACAGCTAAAGTGAACCGAACTGAAGATACGCTAGAGAACAATCTTCATAATTAACACACATGGATTGAGACAGCATTGGAGTGCAGCATCTTTAATATCTAGTTCTTCTAATCCTGTGCATGTGTGCTGGAGTGGAATACATTTCTGTCTGTCCGCCCCTTGAGGACTCAAGCACTTTCTGTAATCCTCTCTCTGGAATCTGTGGACCAGGCTCTTTGTTCCTCATGGAGTCTGGTGTGAGCACAGGACTCTCCACAGGGGCCATTGTGGCCATTGTCTGTAACTCTTTGGTGGCTATTTTGATTTTCATCCTGTTTGTGATCTTGTACAAAGCCTGCAAGGTCCCCTCTAACCAGGAGAAGGTTCCCGTCTTGGCTACAGgacaagaacagaaaaaaaatgaacaaaaatacttGCTGACGCCCTAACAAAGAATCTCTGATGTCTGCACTTCCATTCTGCCAAGGCTCAATATGTTTTCCTAACTTGGCTTTCATAAACCAGACAGCTGCCTTAGACCTGCTGGATTTAATATCcatatctgtttttcttttaagttcATCAGGAAATGCCACCATGGAATATGCATTTCTTTAGCACAGCTTTTACCAATCACAAGGGGATTGAGTATACAGGAGTGCTGGTAGACTGGGGTGGTGGCTGCATCCCAATTAGGTATATTTAGTATGCAATATTTATACAGAGAGACCTTAGTGGTCGAGATCACGTTAGCACTGTGTCCCCAAAGCCTTGACCTGGGTCTTGCAGTGATCAGCTGCATGGACTACCTTAACCGCAATGTCTGGAGTATAAAGAAGGTGTAAAAACCCATGCTCTTTAAATCTATCGATTTAGGGCAAAGTACTCTTTTCAGGAGGTCTGATGATTGGCCAATCTTAAATCCACAGTCCTTCTGAAAAGTTCAGGGCAGATGGAACGTAGGGATGGAGGGAAAGCTGCTGAACCCCTAACCACCTTCAGCACATCTTCCTAGCTGCCACTTTATCACATTGGCCTGCCATAGCCACATGGAGTGTATACATAATGAGTCAACTGGAGATGTGTGGTCTAGCAAAATAATACATGAGATCTAAAGCACTGACTTACAGAGGAGTCCATCTCTAGATATCTGACTGTGTGAAAACCTGATCTTATGGTGACCACATTGCCACAGGGAGTCTGTATGTTTACTCCCAGAGGCCTGTTCACCCTAGTTAATCTTTAAACAGCACAGCAGGAAGgatattaatttaactttggAATCATTTGTGAGAATATAAAAGCTAAAAAATAAAGAGGAGTCTGTTCAGCCCCTTCCTGCTTGTTAGGTAGTGTTTTTCACTGAATCATGAGGATCAGACGGACGTTTCTTCTAGGAGTCAGCTGTCACATACAACCCTCTGAAAAGATCTGTACAACAGCATTGGCAAGGCAAGAGGGACGTAAAACATTAAGATGCCTACATGTGGAGGTTCTACTTTGATAGCAGGCACTAGACTGGGTTTCCATACTGACAGAGATTGGCACATTGTACTTCCACAAAACTGCAAACCACTGACCCAAATGCTTCCAAATCTTGCTCTATTCCAAAAGGTTTTTGACTATTCCAAAAAACAGAGgaagggtatttttttttttttaatattatattagtatttcCATCACaataccttttttattattaaaaaaaatatggtttGATTTGTGCTTGGGTGAAATTTCATTGATACATATTGTGGGACATGTGtctcataataaaataattgttcgtTCTTAGGTGTGAGGGAACAGCAACAAAAATCCTCAAAAGTTTATCTTGTAGTGAGGTACTACATTCCCTAGTTtcttcaatacaaaataacctCAAAAATAATAGTCAAATAATGAAATCCgatattttaattatcagaTTCTGATTTAACCCCATCAAACATTAGAATGTTTGAAATTATTAAAGATTGATTGTTTTCCACTTCATTGTTGAAAATATGGCATT

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98099 True 3068 lncRNA 0.42 2 18058719 18077267

Neighbor

gene id symbol gene type direction distance location
AMCG00010192 NA coding upstream 24568 18021692 ~ 18034151 (+)
AMCG00010197 NA coding upstream 49669 18006219 ~ 18009050 (+)
AMCG00010194 NA coding upstream 63342 17990788 ~ 17995377 (+)
AMCG00010193 NA coding upstream 85025 17969210 ~ 17973694 (+)
AMCG00010191 NA coding upstream 104175 17945232 ~ 17954544 (+)
AMCG00010200 NA coding downstream 93403 18170670 ~ 18177842 (+)
AMCG00010199 NA coding downstream 110911 18188178 ~ 18202438 (+)
AMCG00010198 LOC107675632,LOC107736863,LOC107584535,LOC107661672,LOC107739687,LOC108437682 coding downstream 136748 18214015 ~ 18218373 (+)
AMCG00010201 celf4,LOC103139612,LOC106958278 coding downstream 600954 18678221 ~ 18684640 (+)
AMCG00010204 celf4 coding downstream 699189 18776456 ~ 18805818 (+)
G78607 NA non-coding upstream 81414 17976174 ~ 17977305 (+)
G78546 NA non-coding upstream 213173 17794440 ~ 17845546 (+)
G78529 NA non-coding upstream 537865 17520267 ~ 17520854 (+)
G78392 NA non-coding upstream 803290 17255222 ~ 17255429 (+)
G78385 NA non-coding upstream 817234 17239050 ~ 17241485 (+)
G78682 NA non-coding downstream 373223 18450490 ~ 18450809 (+)
G78758 NA non-coding downstream 886256 18963523 ~ 18963725 (+)
G78760 NA non-coding downstream 894028 18971295 ~ 18971714 (+)
G78772 NA non-coding downstream 929022 19006289 ~ 19010099 (+)
G78774 NA non-coding downstream 936135 19013402 ~ 19013758 (+)
G78410 NA other upstream 705231 17344419 ~ 17353488 (+)
G78396 NA other upstream 780721 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 811569 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 833379 17220036 ~ 17225340 (+)
AMCG00010144 adamts3,LOC103134868 other upstream 1511099 16465564 ~ 16547620 (+)
G78743 NA other downstream 842644 18919911 ~ 18921444 (+)
G78794 LOC107575789 other downstream 1010062 19087329 ~ 19087754 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 1060736 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 1527351 19604618 ~ 19629439 (+)
G79382 NA other downstream 3968851 22046118 ~ 22047542 (+)

Expression


Co-expression Network