G78794 (LOC107575789)


Basic Information

Item Value
gene id G78794
gene name LOC107575789
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19087329 ~ 19087754 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU98291
aaaagacacgtGTCCACagaagaaatcaatcaatcagattccaaactctccaccatggccaaaaccaaagagctgtccaaggatgtctgggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtacgattattcgcaaatggaagaaatacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaatctgTAACACACTACactgtgaaggactgaaatcctgcagcggccgcaaggtccccctgctcaag

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98291 True 426 TUCP 0.48 1 19087329 19087754

Neighbor

gene id symbol gene type direction distance location
AMCG00010212 NA coding upstream 6613 19070927 ~ 19080716 (+)
AMCG00010202 nop56,LOC107661748,LOC107739720 coding upstream 205538 18874762 ~ 18881791 (+)
AMCG00010203 NA coding upstream 220838 18851157 ~ 18866491 (+)
AMCG00010204 celf4 coding upstream 281511 18776456 ~ 18805818 (+)
AMCG00010201 celf4,LOC103139612,LOC106958278 coding upstream 402689 18678221 ~ 18684640 (+)
AMCG00010213 NA coding downstream 15114 19102868 ~ 19108097 (+)
AMCG00010214 NA coding downstream 28981 19116735 ~ 19119081 (+)
AMCG00010218 NA coding downstream 102128 19189882 ~ 19229691 (+)
AMCG00010217 NA coding downstream 142108 19229862 ~ 19245933 (+)
AMCG00010220 gak coding downstream 190590 19278344 ~ 19326725 (+)
G78774 NA non-coding upstream 73571 19013402 ~ 19013758 (+)
G78772 NA non-coding upstream 77230 19006289 ~ 19010099 (+)
G78760 NA non-coding upstream 115615 18971295 ~ 18971714 (+)
G78758 NA non-coding upstream 123604 18963523 ~ 18963725 (+)
G78682 NA non-coding upstream 636520 18450490 ~ 18450809 (+)
G78939 NA non-coding downstream 402903 19490657 ~ 19494085 (+)
G79081 NA non-coding downstream 1194605 20282359 ~ 20282722 (+)
G79091 NA non-coding downstream 1379555 20467309 ~ 20467696 (+)
G79109 NA non-coding downstream 1543458 20631212 ~ 20631454 (+)
G79113 NA non-coding downstream 1569595 20657349 ~ 20657834 (+)
G78743 NA other upstream 165885 18919911 ~ 18921444 (+)
G78410 NA other upstream 1733841 17344419 ~ 17353488 (+)
G78396 NA other upstream 1809331 17274387 ~ 17277998 (+)
AMCG00010160 NA other upstream 1840179 17245585 ~ 17247150 (+)
AMCG00010164 NA other upstream 1861989 17220036 ~ 17225340 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other downstream 50249 19138003 ~ 19184069 (+)
AMCG00010224 NA other downstream 516864 19604618 ~ 19629439 (+)
G79382 NA other downstream 2958364 22046118 ~ 22047542 (+)
G79420 rpl17,LOC107579731 other downstream 3270215 22357969 ~ 22378809 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 3611988 22699742 ~ 22703409 (+)

Expression


Co-expression Network