G78939


Basic Information

Item Value
gene id G78939
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19490657 ~ 19494085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU98458
AGGAAAGAATAATACACCTAGAACTAGATAAGCCTGTTTCAGGAGGTCTAGGGTTTTCTGTGATCGGTGGAGAAGAGGGCATTTTTGTGAAGTCGATCACCCCAGGGGGTACAGCTGACACTGCAGGAACTTTACAGATTGGAGACAGATTGCTTCAgGTAAATGATGAGTCAATGATTGGAGTGCCCCACACCAGAGCTGTAACCACAATTCGCAAAGCTCAGGACCTCGTGCGCCTTACAGTCTCAAGACCCCCAGGACCGAGTCCGTGTGACTATCACCTCATGAGCAATCACAAATGCAGTGGAAAAAAAGGTTGAATTTACTTATTCCATAATAATTGGGCAAAAATATTGTTGTAGAATAATATGTTTGACTTTCAATACATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98458 True 389 lncRNA 0.43 2 19490657 19494085

Neighbor

gene id symbol gene type direction distance location
AMCG00010223 kcmf1,LOC107684340 coding upstream 30512 19447337 ~ 19460145 (+)
AMCG00010221 acaa2,LOC107752996 coding upstream 129935 19338739 ~ 19360722 (+)
AMCG00010220 gak coding upstream 163932 19278344 ~ 19326725 (+)
AMCG00010217 NA coding upstream 244724 19229862 ~ 19245933 (+)
AMCG00010218 NA coding upstream 260966 19189882 ~ 19229691 (+)
AMCG00010228 mapk10,LOC107719076,LOC107749009 coding downstream 217242 19711327 ~ 19721563 (+)
AMCG00010227 mapk10,LOC107749009,LOC107719076,LOC107662288 coding downstream 237789 19731874 ~ 19756078 (+)
AMCG00010231 NA coding downstream 512139 20006224 ~ 20018927 (+)
AMCG00010236 NA coding downstream 567164 20061249 ~ 20140278 (+)
AMCG00010235 NA coding downstream 699859 20193944 ~ 20202940 (+)
G78774 NA non-coding upstream 476899 19013402 ~ 19013758 (+)
G78772 NA non-coding upstream 480558 19006289 ~ 19010099 (+)
G78760 NA non-coding upstream 518943 18971295 ~ 18971714 (+)
G78758 NA non-coding upstream 526932 18963523 ~ 18963725 (+)
G78682 NA non-coding upstream 1039848 18450490 ~ 18450809 (+)
G79081 NA non-coding downstream 788274 20282359 ~ 20282722 (+)
G79091 NA non-coding downstream 973224 20467309 ~ 20467696 (+)
G79109 NA non-coding downstream 1137127 20631212 ~ 20631454 (+)
G79113 NA non-coding downstream 1163264 20657349 ~ 20657834 (+)
G79118 NA non-coding downstream 1275914 20769999 ~ 20773081 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 306588 19138003 ~ 19184069 (+)
G78794 LOC107575789 other upstream 402903 19087329 ~ 19087754 (+)
G78743 NA other upstream 569213 18919911 ~ 18921444 (+)
G78410 NA other upstream 2137169 17344419 ~ 17353488 (+)
G78396 NA other upstream 2212659 17274387 ~ 17277998 (+)
AMCG00010224 NA other downstream 110533 19604618 ~ 19629439 (+)
G79382 NA other downstream 2552033 22046118 ~ 22047542 (+)
G79420 rpl17,LOC107579731 other downstream 2863884 22357969 ~ 22378809 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 3205657 22699742 ~ 22703409 (+)
AMCG00010292 rchy1 other downstream 3821930 23316015 ~ 23329546 (+)

Expression


Co-expression Network