Gene
RNA
| Item | Value |
|---|---|
| gene id | G79272 |
| gene name | cks2,LOC107675750,LOC107653382 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030129.1 |
| NCBI id | CM030129.1 |
| chromosome length | 41163702 |
| location | 21629158 ~ 21632876 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| cks2 | Predicted to enable several functions, including cyclin-dependent protein serine/threonine kinase activator activity; histone binding activity; and ubiquitin binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within cell division. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Orthologous to human CKS2 (CDC28 protein kinase regulatory subunit 2). |
| description |
|---|
| PREDICTED: cyclin-dependent kinases regulatory subunit 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU98862 | True | 1485 | lncRNA | 0.34 | 3 | 21629158 | 21632876 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00010257 | LOC103368378 | coding | upstream | 98840 | 21529623 ~ 21530318 (+) |
| AMCG00010250 | NA | coding | upstream | 206258 | 21405183 ~ 21422900 (+) |
| AMCG00010252 | NA | coding | upstream | 524065 | 21081237 ~ 21105093 (+) |
| AMCG00010256 | NA | coding | upstream | 581681 | 21028778 ~ 21047477 (+) |
| AMCG00010251 | NA | coding | upstream | 606457 | 21004289 ~ 21022701 (+) |
| AMCG00010253 | NA | coding | downstream | 529 | 21633405 ~ 21656223 (+) |
| AMCG00010255 | rad1,LOC107718285,LOC107585563,LOC107743754 | coding | downstream | 102295 | 21735171 ~ 21740568 (+) |
| AMCG00010254 | brix1 | coding | downstream | 107898 | 21740774 ~ 21746219 (+) |
| AMCG00010259 | NA | coding | downstream | 114165 | 21747041 ~ 21756358 (+) |
| AMCG00010260 | mthfd2l | coding | downstream | 158653 | 21791529 ~ 21826339 (+) |
| G79259 | NA | non-coding | upstream | 96561 | 21531677 ~ 21532597 (+) |
| G79190 | NA | non-coding | upstream | 555084 | 21073536 ~ 21074074 (+) |
| G79178 | NA | non-coding | upstream | 576582 | 21050816 ~ 21052576 (+) |
| G79157 | NA | non-coding | upstream | 629146 | 20988160 ~ 21000012 (+) |
| G79118 | NA | non-coding | upstream | 856077 | 20769999 ~ 20773081 (+) |
| G79355 | NA | non-coding | downstream | 369467 | 22002343 ~ 22002665 (+) |
| G79357 | NA | non-coding | downstream | 374515 | 22007391 ~ 22010144 (+) |
| G79380 | NA | non-coding | downstream | 411757 | 22044633 ~ 22045794 (+) |
| G79394 | NA | non-coding | downstream | 436547 | 22069423 ~ 22071493 (+) |
| G79414 | NA | non-coding | downstream | 602139 | 22235015 ~ 22235264 (+) |
| AMCG00010224 | NA | other | upstream | 1999719 | 19604618 ~ 19629439 (+) |
| AMCG00010216 | LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 | other | upstream | 2445089 | 19138003 ~ 19184069 (+) |
| G78794 | LOC107575789 | other | upstream | 2541404 | 19087329 ~ 19087754 (+) |
| G78743 | NA | other | upstream | 2707714 | 18919911 ~ 18921444 (+) |
| G78410 | NA | other | upstream | 4275670 | 17344419 ~ 17353488 (+) |
| G79382 | NA | other | downstream | 413242 | 22046118 ~ 22047542 (+) |
| G79420 | rpl17,LOC107579731 | other | downstream | 725093 | 22357969 ~ 22378809 (+) |
| G79475 | dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 | other | downstream | 1066866 | 22699742 ~ 22703409 (+) |
| AMCG00010292 | rchy1 | other | downstream | 1683139 | 23316015 ~ 23329546 (+) |
| AMCG00010320 | LOC104946060 | other | downstream | 2287884 | 23920760 ~ 24009853 (+) |
