G79357


Basic Information

Item Value
gene id G79357
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22007391 ~ 22010144 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU98961
GGGTCTTTGTTTTGTAGTATGTGGTGTTTTTCATGAAATCATTTTGTAGAACTAAACAAATACTTGCAGTGTATCACATGTAATTCATTCAAGTGTTCTTAGCAATTAGTGCgaagtgaagaaaatgttttgacaaGGGATTTTTTAGTACAACTTAATAGTGTGTACCTAATAAGATGATGCAGCTGATGGCTTACATACATTCACTGTGAACTTTATTTAGGGTAGCTGTTGtaacagagaaaaaaagattagTTTATAGTTGATTGGagtttacatttcttttctacAGTGTATGTGACCAATTGGTGTGTTATTGCTTATTCACTTTTAATCTTGTCTAAAATCTTTACAAGATCACTTCCCAAAGGCATTGCACTATATTGGAATTATTTTATAGAATACCAGCCTTAATGAAAAACTGGAAATCCTGGAAACCAAGTTCCCTTCAGAGCATGTTTTTCCTTCCTAAAGCAAACTAAGCTAATCAATGTACAAGAAAAGTAAGCCAATTGTACATATCATTAAACTGcatgttttaatgattttttaaacaattttattgcttttgttggttttaaagaaaaaggtttCAGACTTGAAAACAATGCGTTTTGGGTATTTTGGTTAGTTGGTTACTAAAATCACCTGTTTGGTATAGAATTAGTGAAGGAAAAGAGACCCCTGTGCTTagaataaatgttgaaattaagaaaatatatagtataatacaaTATGATGTGTAGaccaaattaattatatattcaaattagcAAGAGGAtccacactttgtttttttccaaaaattgtgcatttaataaattcttagtaaaacaatttgtattgtttaaataaaatgacacctGAGGTATATTTTCAGTCATccccccaacaaaaaaaactactaaACTTAAATCTGGTACACATGCCAGGATTTTGTCACAACTAAgatgtaaaacaaatcaaaaagaaaaacaccaaacaaaacatgtttggcatttttcctataatCTTCCAGCCAATCTGTAAAGGTGGAGACTAGATTTAAGGTATAATATAGTAACTCTTCTCAGCACATTAAAGATGTTAAGGTCTTTTTGCCTGGATCCATGCAGGCTGCATCAATTGGAGAATTCAGTCTGTGTACTGCAGTCAGTAACTGGTTTGGACCCAGAGAAGTCTTTGGACAGCACTGCCTTGGCCAGGAGACTGAGTGTGGCTGAAATGTTGTGATTCACGGTTATCTGCTCCATCTGAAACTGTTCACAACTGGTCTTCTGCATGAGGGCTCTACTCATCTCACCCACTTGCTCCGTCAGCTTTCCTATCTGATGGGCCAGTAAACCAACCTGGTTGCCAAGCGAAATGAAATTAGGGTTGTTATCCTGCTCGTCAAAGTTGAGGCCCTTAAACACTGCGTCACTGGGCTGTGGCGTATACAGAAACTCAGGTTGTGGTTCCTTTTTCACCTGCACGGTGCCGGTGTCAAGGCTCTGCTGCTGATGCTGTTGCTCTGGAAGTTGTGTGCTTGGAGTGTACGGGAGGGAGCAGGGGACAGAGGTGAAGGGTGGGCCCACGATCCGGGGAGTTTCTGAGACTCTGAATTCCTCCACATAAGAAGGGTGCCCTTGGGGTGGCAGTACCAGCAACGGTCCTTGCGGGGTTTCTTCTGCTTCTTGCTTTGGCTCAGCAGGTGGAAGACGTTCTTGCGCTGTACAAAAGCAAGGAGAAATAAGAAATGTGAATATTACCACAGAAATGTTCATTGGCTAAAACTCATGCTTCACAAATCCCAAATGGGATTAAACATTACcaagaaacaaatgcaatggAAAAtgctaTACTGAATGGAAATGACAAAGCATCTGCTTGTGAGCCAGCTATAGAACAGAAAGTTTCACACTTCTACCCACATCTAGTGTATATCATCTTTAATAGTTTACATTATCTAGTTCTTGCTTTTTGATAgttcaaaattgtatttaaataaaacatcagcGGGTGGTTGAGACATCTAATGAAtattattagatttatttttacattctgTGCAACATCACACAATTGCATCAGTCTCTTCAACCACTTATGCAATGCAATTATGTAGGGGTAGAAAGAGTATATTTACCTTCACGTGCACTGGAATCTCCATGTAATGTTTCTTCAGATTCAGTTCCACTTACATTCTCTaagtaacaacaaaataacagtaTATTCAGAAAATGGCTACTAATGGAAGAAATTGCTTGCACATATTCAGTTATTAATTTCCCTACTAAATTAATCTTCAAGTTAAGTTTAGCATGTATTTAAACAACTTTCTTTCTCTATAGCTATGCATCTACATTAAAACACTACTTAAGACACACTAATGAATAATTACTCATTGAGGAGACTTCAAAGAGAActtcaaaaaacattaaatattattttaaaaaattacaattatctAGAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98961 True 2457 lncRNA 0.36 2 22007391 22010144

Neighbor

gene id symbol gene type direction distance location
AMCG00010261 NA coding upstream 121253 21880507 ~ 21886138 (+)
AMCG00010258 NA coding upstream 166488 21831125 ~ 21840903 (+)
AMCG00010260 mthfd2l coding upstream 181052 21791529 ~ 21826339 (+)
AMCG00010259 NA coding upstream 251033 21747041 ~ 21756358 (+)
AMCG00010254 brix1 coding upstream 261172 21740774 ~ 21746219 (+)
AMCG00010266 myl5 coding downstream 7540 22017684 ~ 22020958 (+)
AMCG00010272 NA coding downstream 69144 22079288 ~ 22096930 (+)
AMCG00010278 tnksa,tnks,LOC107706493,LOC107567652,LOC107591704,LOC108279024,LOC107667582 coding downstream 519986 22530130 ~ 22541832 (+)
AMCG00010279 tnksa,LOC108436993,LOC108279024,LOC107706493,LOC107681059 coding downstream 640885 22651029 ~ 22694955 (+)
AMCG00010281 LOC108436681,LOC105014741,LOC106568256 coding downstream 885776 22895920 ~ 22917724 (+)
G79355 NA non-coding upstream 4726 22002343 ~ 22002665 (+)
G79272 cks2,LOC107675750,LOC107653382 non-coding upstream 374515 21629158 ~ 21632876 (+)
G79259 NA non-coding upstream 474794 21531677 ~ 21532597 (+)
G79190 NA non-coding upstream 933317 21073536 ~ 21074074 (+)
G79178 NA non-coding upstream 954815 21050816 ~ 21052576 (+)
G79380 NA non-coding downstream 34489 22044633 ~ 22045794 (+)
G79394 NA non-coding downstream 59279 22069423 ~ 22071493 (+)
G79414 NA non-coding downstream 224871 22235015 ~ 22235264 (+)
G79415 NA non-coding downstream 239487 22249631 ~ 22249832 (+)
G79427 NA non-coding downstream 369619 22379763 ~ 22384132 (+)
AMCG00010224 NA other upstream 2377952 19604618 ~ 19629439 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 2823322 19138003 ~ 19184069 (+)
G78794 LOC107575789 other upstream 2919637 19087329 ~ 19087754 (+)
G78743 NA other upstream 3085947 18919911 ~ 18921444 (+)
G78410 NA other upstream 4653903 17344419 ~ 17353488 (+)
G79382 NA other downstream 35974 22046118 ~ 22047542 (+)
G79420 rpl17,LOC107579731 other downstream 347825 22357969 ~ 22378809 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 689598 22699742 ~ 22703409 (+)
AMCG00010292 rchy1 other downstream 1305871 23316015 ~ 23329546 (+)
AMCG00010320 LOC104946060 other downstream 1910616 23920760 ~ 24009853 (+)

Expression


Co-expression Network