G79420 (rpl17,LOC107579731)


Basic Information

Item Value
gene id G79420
gene name rpl17,LOC107579731
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22357969 ~ 22378809 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU99032
GGCAGCCAACAGGTTTGTACTCGTTTTTTtggggtgtttattttttatatacatttactcCCGAGCCATGAGTTTCTGCTTCTTCAGCTTCTTCTGGGAAACCTGGGGAAATGATAGAAGCATTAAAAATCAGCTTGGGACAGTTACATCCAAATCTCTCAGATACCCAGGGATACTGACACACTGGGGTGTACTGCTTTATAACATGAGGCACAACTGTCCTGCCCTAAATATAGAATTACAAACCCCCACTCAACATGGAGAACATAGCTTTTGGCTGCTCAGatttataaaagtattttcatttttgtcaaaGGTGTCCTAAAAGTCATCACTGCAACCATCAGCTACTGTTTCAAATCGATTACAGGTGGAAGAAAATGAACCATTAGTAAACCTAGTATATTTTCACTGACCAAAAACCTAGTCTTACATTAAGATTAACCTAATCATACCCAATTGTTAACAGGCCCTTATGGGATATTAAATTGGTGAAAGACACAGCTTTCAAAGGGTTTGACTTGTCAAACATCACAAAAGGAGTTAAAGCcagaatgttttgatttgtatacCAAAGTAGTTCATAATGATTTCATACTGCAAATTCATATTCTCCGGAGACTCGTACCTTTTTCTTCTGAGCGACCTCCTCTTCTGGTTTGGGCACAATTTGCTCCTTCTCAGTGAGGATCATCTCAATGTGGCAGGGAGAGCTCATGTATGGGTTAATGCGGCCATGGGCACGGTATGTGCGCCTGCGCATCTTGGGCGCTTTGTTAACCTGGATGTGCTCAATCACCAAAGAATCCACATCAAGACCCTGCAGCAGGACAAACACATTGCAACAAATTCAAACATGCCTGTTTGAAACAGCAAAGTTATCAAAAGGGCCCTGCCTGGGTAAGTTGAAGGCAGATAGAGTATGTCAAGTATGGCAAAACTTGATTCATTCAATTCCCCTGAATTTTGCGAACTTGAatgaatgtttgtatttaaattcacaaatgtCATTACTACCAAGTGGTTTTACTAGGAAACATTTGCATTATGGTTATTTTAAGTCTaggattttaaattagatttgagGGTAATCCCCACAAAAATTAACCATAATTGCTCAGATTTGAAATTCTTTTCATGGGATTTCCAAAGGTGTCCTAAGTAGTCATCATTGCAATTATGGTTTACTTCAAgacaaacattttataaaacccAAATTCCAACTGTTACCACCAATAAGTAAAAACTAGTTAAAAATGCATAGGCACAgcataaagaaaaatatcacTGCAACTCAGACACCTGGTAGCTTATGGCACATCTGTAAAATCAATCATTTGCAGTGTGGACACAGCCAGCTATCTGATAGCTGAAGCAGCATGAAGTGTTTGACACCCATAAAGGATGTTGTAGACTAACTGGAAACTGATCAATTATCCCTTTAGAGGGATAAACAAGGCTTTATAAAGTGTAATATTCCCAATTGAAATGATATCCCAAGTACAATGTAAAGTGGGTCAACACTGTCACATAACCACAGATAATCCATTACCTTGAGCTCAGCATTGCTCTCGGCGTTCTTGAGCATGTGGAGGAGGAACTCCGCACTCTTCTTTGGCCAGCGCCCCTGTGTCCAGCCCCACTGCTTAGCCTAGGGCACACCTGCCGACTCCACCGTTGTACCGGCGGAAGGGGACGCACTGCCGCTTCACCACCACATCCTTCAGGTACTTGGAGGCCTTGCGGATGTGCATGCCCTTGATGGCCTGGGCCGTCTCACGGGTGTTCTGTCAAACAAGAGCACGTGTTACACAAGCACAGCAGCCAAGAGCACCAGCCTGCTTTTCCTACAGCTGAATCAAGCATGGATGTcaaaagttgctcagatccttagtTTGGTTATTGTCATGATTCACTCCAAAGGTCTCCTAAGTTTGGTCATCACTGCAAAATTCAACTCCATTCTTGATTTTCACTCAAACTGACAGCACAGGAAGGACAATAACTGTGCAAGCTGAGGAAAGCACAATTTCTGCACTTTGAACATTTAGAAACATCTGATGCTCAAGTATGTATTGTAGAAGTTAAATGAGAAATAAGGGCCTGATCAAACTTTGCATAGAAGGGGGTGTGTACATTTTCCTTATTTACATCCTAATTATAAGTGATTTTAGGATAACCATTgtaaaatgaggaaaaaatcTGAATCCACTATCAAATGTGGGACAAAGCATGCTACTCTTAGGGAAAGCAACAAGCAtctgtgccaaaaaaaaaaaaaagatctatgGACAGTATTTCTATAGAACCGAGTGGTTAGTTTTCTTAGCAAGATTGTGCAGATGTAACATTTACAATACAACTCGAAcaggaaaagtaaaaaaaacacttaagtcTGAAGTGCATGTATGCCCACACAGTACCTTATGAATGATGCATTGAccatgtacatttaaaacttcATAGGATGCATCACTCAAGTACTGCGCAGACATTTTAGGACTACGTACAATTACAATGAAGGCCAACGCCACGTTTCTTCAGCTAGGTGCAGACGACGGcaatgcagtgttaatgtacacGTTTCTCGGTCAGGCCTTTATTTCGCCCTActtcaattaaatacacacacatggcCACGCAGCGCATCCGAAATAATTACCTTGAAGTGAACCCTCAGATTTGAACCCCTGGCCTTGCATGCTGTGAAGAGAAAGTTGAAATGAGACAACGACACAAGGGTACAACATGTGAAATAGCGGACACTGGGGAGGATGCCGTGATCGTAAAGCCGGCATACTTACACTTAGTTGGGTTCTCGGGATCGAGCGAGTAGCGGACCATTTTGAGAGATTAactgtaaaaacagaaaacgaATTAATTAAAACCCAGACAGACCAAACATGATAGATAAATCCTGTTACTTAAAGACTAAACTGGTGCTTAAACAACGCATGTTTTAGTCTGATTTAAGCAGCAGGCCTAGCAATTTCTATCATATCCACGTTGGGTGTCGGATGCTTCCAATGTGTGAACGTCCACACAAACAGGCTAGTTTCTCTGTTTCTCGTTTACTCTTTAAGCCTTTAGACAGTTTTAATAACCGATTTGTATTGCTTACAAGACGTTCACATGCTGCATTTAAGTCTAAAGCAGCAAAATGCCACCGGCAGTCGGCCATTGTATCACTCAGTGGGGGCAAAACAGAAATTTACCGAAAATCCATACTTATCCATTCACATACGCTTCTAAACAATATGCCCTAAACATATTTAACACGTAcagatataatttaaaacacataatgCTACGATGTTTTCGATATAAGTAGGATTATTTCCTCTCTGTCTGCGCCTGATCTGTGTATCACTACTTACTCTTCTCAGGC
>TU99036
GGCAGCCAACAGGTTTGTACTCGTTTTTTtggggtgtttattttttatatacatttactcCCGAGCCATGAGTTTCTGCTTCTTCAGCTTCTTCTGGGAAAACCTTTTTCTTCTGAGCGACCTCCTCTTCTGGTTTGGGCACAATTTGCTCCTTCTCAGTGAGGATCATCTCAATGTGGCAGGGAGAGCTCATGTATGGGTTAATGCGGCCATGGGCACGGTATGTGCGCCTGCGCATCTTGGGCGCTTTGTTAACCTGGATGTGCTCAATCACCAAAGAATCCACATCAAGACCCCTTGAGCTCAGCATTGCTCTCGGCGTTCTTGAGCATGTGGAGGAGGAACTCCGCACTCTTCTTTGGCCAGCGCCCCTGTGTCCAGCCCCACTGCTTAGCCTAGGGCACACCTGCCGACTCCACCGTTGTACCGGCGGAAGGGGACGCACTGCCGCTTCACCACCACATCCTTCAGGTACTTGGAGGCCTTGCGGATGTGCATGCCCTTGATGGCCTGGGCCGTCTCACGGGTATCAAGGGCA
>TU99038
GGCAGCCAACAGGTTTGTACTCGTTTTTTtggggtgtttattttttatatacatttactcCCGAGCCATGAGTTTCTGCTTCTTCAGCTTCTTCTGGGAAACCTTTTTTCTTCTGAGCGACCTCCTCTTCTGGTTTGGGCACAATTTGCTCCTTCTCAGTGAGGATCATCTCAATGTGGCAGGGAGAGCTCATGTATGGGTTAATGCGGCCATGGGCACGGTATGTGCGCCTGCGCATCTTGGGCGCTTTGTTAACCTGGATGTGCTCAATCACCAAAGAATCCACATCAAGACCCTGCTTGAGCTCAGCATTGCTCTCGGCGTTCTTGAGCATGTGGAGGAGGAACTCCGCACTCTTCTTTGGCCAGCGCCCCTGTGTCCAGCCCCACTGCTTAGCCTGGCACACCTGCCGACTCCACCGTTGTACCGGCGGAAGGGGACGCACTGCCGCTTCACCACCACATCCTTCAGGTACTTGGAGGCCTTGCGGATGTGCATGCCCTTGATGGCCTGGGCCGTCTCACGGGTATCAAGGGCA

Function

symbol description
rpl17 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to several human genes including RPL17-C18orf32 (RPL17-C18orf32 readthrough).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99032 True 3388 lncRNA 0.41 2 22357969 22361963
TU99036 False 538 TUCP 0.54 5 22357969 22378809
TU99038 False 538 TUCP 0.54 5 22357969 22378809

Neighbor

gene id symbol gene type direction distance location
AMCG00010272 NA coding upstream 261039 22079288 ~ 22096930 (+)
AMCG00010266 myl5 coding upstream 337011 22017684 ~ 22020958 (+)
AMCG00010261 NA coding upstream 471831 21880507 ~ 21886138 (+)
AMCG00010258 NA coding upstream 517066 21831125 ~ 21840903 (+)
AMCG00010260 mthfd2l coding upstream 531630 21791529 ~ 21826339 (+)
AMCG00010278 tnksa,tnks,LOC107706493,LOC107567652,LOC107591704,LOC108279024,LOC107667582 coding downstream 151321 22530130 ~ 22541832 (+)
AMCG00010279 tnksa,LOC108436993,LOC108279024,LOC107706493,LOC107681059 coding downstream 272220 22651029 ~ 22694955 (+)
AMCG00010281 LOC108436681,LOC105014741,LOC106568256 coding downstream 517111 22895920 ~ 22917724 (+)
AMCG00010283 idua coding downstream 626435 23005244 ~ 23044243 (+)
AMCG00010282 pde6b,LOC108436964,LOC108232538,LOC107706500,LOC103473654 coding downstream 678811 23057620 ~ 23076233 (+)
G79415 NA non-coding upstream 108137 22249631 ~ 22249832 (+)
G79414 NA non-coding upstream 122705 22235015 ~ 22235264 (+)
G79394 NA non-coding upstream 286476 22069423 ~ 22071493 (+)
G79380 NA non-coding upstream 312175 22044633 ~ 22045794 (+)
G79357 NA non-coding upstream 347825 22007391 ~ 22010144 (+)
G79427 NA non-coding downstream 954 22379763 ~ 22384132 (+)
G79443 NA non-coding downstream 96628 22475437 ~ 22475983 (+)
G79476 dusp4,LOC107703586,LOC107708543,LOC107591703,LOC107589246 non-coding downstream 325980 22704789 ~ 22705108 (+)
G79508 NA non-coding downstream 709288 23088097 ~ 23088362 (+)
G79509 NA non-coding downstream 717782 23096591 ~ 23096838 (+)
G79382 NA other upstream 310427 22046118 ~ 22047542 (+)
AMCG00010224 NA other upstream 2728530 19604618 ~ 19629439 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 3173900 19138003 ~ 19184069 (+)
G78794 LOC107575789 other upstream 3270215 19087329 ~ 19087754 (+)
G78743 NA other upstream 3436525 18919911 ~ 18921444 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other downstream 320933 22699742 ~ 22703409 (+)
AMCG00010292 rchy1 other downstream 937206 23316015 ~ 23329546 (+)
AMCG00010320 LOC104946060 other downstream 1541951 23920760 ~ 24009853 (+)
AMCG00010333 NA other downstream 2454262 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 3613749 25992558 ~ 25996414 (+)

Expression


Co-expression Network