G79572


Basic Information

Item Value
gene id G79572
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23219537 ~ 23220917 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU99239
TCGTCTAGTAATTAAGACCCGAATTCAATCAAACTTTGTTCCACCTGTAAATCCGAAAGGTAGAGACTTCTTAGTACTACCGAATGGAAACCGTTATCCTTTCAGTCACTTAAAACCCTGTCGGTAGgagttgttttctattttacacCACCCAGTGGTTATCCTAACGCATTCAGCAGCCTTACATTTTCATAGTCTTCATCAGAGTCTTCCTCTTTCGCTTGGGATAGTTTCCGCAGGTGGGTTGGGGCCTCATCCACTGATGATCGGAAACTTTGTCCTTCGGGTGATGACCtTGAATGGACTGTCCAGGACATTTGGGTTTTAACTTGGTGGATGGGGCAGGAGGCTTCGGAACAATTGGCGGCTTGTATAGCCCAGGTTTCTGAGTAGTTAGTGATCCTTGGGTCTCACTTTCTGGAGGCTGGATGTTGTATTTGTGAATGGGTATATTAGGCTTATTGGCAGACCGCAGGGCAAGCTTTGCCTGGAGGTCACTGCAAATGGGCAAAGTCGCTGAGAACTGTCCAACACCGATGGGCGGTTTCTTTTCAGAGCTAGGGCAAACAGGCATAGTGGCTGACATCTGTTTGGAGGCCAAAGTTTTGTCGATACAAGCAGGGGATGGAGGCTTAGGTATCATTTGGGGTTTGGGGCCTTTGGGGGGCGGGGGTAAGTGAGGAGCAAAAGGCAAAGGCGGGGGAGGGAGCTTGCTGTGGCCCTGGGTGGAGACCTTGTCGCTTTCAAATCTCTTTGGTGGTGGGCTAGGTGGAGGGGCTTTCTTTTGAAGAACAGGCTTCGGCAGAACTTTAGTGGGAACTGGTGGTAACAGTAGAGGTGGCTGTGCTCTGACTTGTAGAGATGATACACTTTCTTGCCGGGACTGTGGCTTATGGTATgggacaggaggaggaggatagGCAGGTGGAGGTACAGTAGGCTGgcctgaaataatacaaaatataattaataaccaAAAACAAGATAATGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99239 True 993 lncRNA 0.48 2 23219537 23220917

Neighbor

gene id symbol gene type direction distance location
AMCG00010291 k0020,pum3,LOC107705054,LOC107742987 coding upstream 61630 23140482 ~ 23157907 (+)
AMCG00010290 NA coding upstream 81195 23110111 ~ 23138342 (+)
AMCG00010282 pde6b,LOC108436964,LOC108232538,LOC107706500,LOC103473654 coding upstream 143304 23057620 ~ 23076233 (+)
AMCG00010283 idua coding upstream 175294 23005244 ~ 23044243 (+)
AMCG00010281 LOC108436681,LOC105014741,LOC106568256 coding upstream 301813 22895920 ~ 22917724 (+)
AMCG00010293 NA coding downstream 88592 23309509 ~ 23313460 (+)
AMCG00010297 NA coding downstream 225200 23446117 ~ 23450175 (+)
AMCG00010298 klhl8 coding downstream 230275 23451192 ~ 23466316 (+)
AMCG00010300 NA coding downstream 255481 23476398 ~ 23478378 (+)
AMCG00010299 NA coding downstream 259966 23480883 ~ 23511626 (+)
G79567 vldlr,LOC106568141 non-coding upstream 31355 23186054 ~ 23188182 (+)
G79509 NA non-coding upstream 122699 23096591 ~ 23096838 (+)
G79508 NA non-coding upstream 131175 23088097 ~ 23088362 (+)
G79476 dusp4,LOC107703586,LOC107708543,LOC107591703,LOC107589246 non-coding upstream 514429 22704789 ~ 22705108 (+)
G79443 NA non-coding upstream 743554 22475437 ~ 22475983 (+)
G79596 NA non-coding downstream 112347 23333264 ~ 23333473 (+)
G79597 NA non-coding downstream 117055 23337972 ~ 23338206 (+)
G79658 NA non-coding downstream 309717 23530634 ~ 23533701 (+)
G79660 NA non-coding downstream 407708 23628625 ~ 23630604 (+)
G79673 NA non-coding downstream 418136 23639053 ~ 23675957 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 516128 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 840728 22357969 ~ 22378809 (+)
G79382 NA other upstream 1171995 22046118 ~ 22047542 (+)
AMCG00010224 NA other upstream 3590098 19604618 ~ 19629439 (+)
AMCG00010216 LOC105937265,LOC103469946,LOC102230010,LOC106933859,LOC108233764,LOC105014676 other upstream 4035468 19138003 ~ 19184069 (+)
AMCG00010292 rchy1 other downstream 95098 23316015 ~ 23329546 (+)
AMCG00010320 LOC104946060 other downstream 699843 23920760 ~ 24009853 (+)
AMCG00010333 NA other downstream 1612154 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 2771641 25992558 ~ 25996414 (+)
G80014 NA other downstream 2791567 26012484 ~ 26026303 (+)

Expression


Co-expression Network