G79675


Basic Information

Item Value
gene id G79675
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23688730 ~ 23698248 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU99366
AGAAGATGCTCCTACACAAGGTGCGAGCTGCGCCACTGAAGGAGGGAGTTTTGGAAAGCGCAATGGAAGTGGTGCACAGAGCGAAGAGGTCGCTGTTCTGGCGCTGGAATATGTTGAGACCAGTGGGCTACAGCTGCAGAGAACACTTTGAGTGTGCCACCAATTACTGCAAGGAAAGATCTTGCACTTTCTTGAACTTTACAGCGTAGAACCAATCAAACACCACCTACACAGAGACTGTCCTCTCCCTCCAAGAAACAACGATGTGTGAACTGATAATTCTTTGGCAGCTTGGTAGCCTCTTTAATCAAAAAAGCCCTCTGTTATAATTAGTTATTGGTTAAGCaatcctgtaaaaaataaatctataaaaagACACCCTTGCAAATATGATGTTAATATGTAGTAAAGACCTTACGTTAATAAAAATAACGTTACTATAAGTAATCATACCAGATCTATATAGCGGAGACCTTTAGCATCCAACACATTTGAGAACATATTGCCAGTGTTCAGTGATTATGGGACGAAGTTAGGACACTAAATGAATCTCCAGTCTTTACATTATGCTtcaataaaccaaaatattctgattatatattaatgttttattaatggctAACAATGGGAAGTTTGTTACAGATGCAAAGCAATAGACAAGTGTATGTGCCATCTCTCAATCCAGATTTGAAAACTAAAGTTTGGTTTAtatggggggagaaaaaagtgTTTGGACAAAGCATGTCCATATTAGAAATGCAGAAGATTAATATAcatctttattctttattaagCCTTATTATaaccattaaaaacattgtgttaatttaatttaaaatggaaaaagttggtttagattaaaattaatacttCAACTTTGCAGGGCTGAGTATATGGGTCTATTGTTGTATAAACACTGTACAGAAAGATAGTTTGCACACAGCAATATTGAAGGATTATAGATGTGTATATTgccttatatatttattttttgaatgcattatttCTTGTTGCTGGAGTTTGAATGCACATAAAGAATGTAAACCGTTAAAATGGTAAAAGgtaattttattgttattgtttgttacagtaaaaagtgcatttatttttttaatgttaaacatgCTAAACTATTTAGCACAAGgtggaaaagagagaaagaaattcTGTACTGaagtgaaagaaataaaatcagttttgaGGAATATGACTCTGTGACATTTACAGTGAAACCTGGTGGTTTCGGACAAACACACTGGTGCACCGGAGAAAGATGGAGGACCCACAGACATTCAATACAGTTCAATTTGCACATATTATTTATAGCATTGTCAGGTATCTTACacagttcattaaaaacaatcaaacatacAGTCAATGATGCCAAGCCATATACACAAGGAGTGAGCGACAGGATTTATTGATTAGGTTATACATAAGGAGGGAGCCATTCCATTCCAAAGTTCtgacacacaaatgcataaacCTTGCTATGCCATTACCTTCAACCCGTACTGCATGGCATTGAAAAAGGCTTTTTCTTTAgataagaaaatggaaaacttCCCTGTATCTTTTTGTCAAAGTCTAACTATCTCTCCACAGGACAGACGTCACAGAGGGAAAAATGGGATAAAACACTGGTGCCAACATAGGCTGTTTAGCGTTTTCTTTGCCCTTTTGCagacttcatttatttaacgGACGCCTACAAAAATTGGACAAGAGAAATGCAAAGTCCTCTCTCTATGGTATGTAGGACCtgtcacacaaaatacacaagagTAGTGGTTTATTCAGTGAGGTATGATCAGTTAAAGCCTTCCTGTTCTTAGATTCCACATCTTCAGGGCATGCTTTATCCTGAGAGAGGATAGTTTGGGACCTGAAGGGGATAGGATACTGTATGGCCAGGATATTGAGACTTTTTTCATGGATAGTTTACATCCACCCTGGTACTGGAGAGCCTGAATGCCTCaggttttataattaaatcattaaatcaccaccattaaatctgtttaaaaagtCCTTGAATTGCATTCCGCCCATTAGCAGGTGTTGTGGTAAACACCCTCAGAGATTAACACCTGCATACCCTTTAACAGTGAAGGTCCAGAGATCACTAAATCAAACAGATGACTTACTTCACttagtaattacattttcccagCCTCCCAGGAAACAAACTGGTGCTGGCGCTCTCTTCGGACACAGGGTGGGGGGCAGCCCCATGTACATCTCATAGCTTCCACTCAGAAACCACAGGGACAGTTTCACTTAACTTTGAGATTTCAATATTAGGATGAGCATACATATTCTCAGGATTGCTCATTCCCGAAGAGATGTACTTAATCGACTTGGGTATAAAATGCATCTGCAACTACTTTTACTGCAACTACTTTGTGTTCTCCCCTACTCATCGACATCTTCTCACCTCTCATCTACAAATCCAATTCAGTCAAACATCTCTTGCTGATGACCTTCTGCACCTTTTGAAAGTTCTGAAATGAGTCAAGAGGACTGTGAACAGCTGCTGAGTTAGGGTCAGACCAAATCATAACTTCGACCAAATCGCCAATCGCAAAGTACTCACCTGTGGCAAactgtagtttaatttattgtcacatGCCAcgttctactacttataaatcaaaacttgatcggttaaaagttaaaacttgatgctttaatttggtctaggccttaaTGTGATTGCAATTTGTAGAACCGTAAATAAAATGCTTCAATGTAAGGAATAGGGGTGAACACATTCTGTATCATATTTGAAGCtctgtaaatgcatttgaactTGAAGTAAAGTAATGACTGTTTGGTGAAATcgtttgtaaaatatatatacattgttcaATGGGTCAGTGGGCTATGAACCCCCGGACCCTGAAAATACCATCGACGTCAGCAGCATTGTCCATCCTAATACATTACTATTAAAGTGCAAATccttaaatactttaaaaggtATTCCATAAAATACTAGCACAATAATACACTATGGCCGACAAAGTGATTGGATCACCTGGAAATCACTAGGAAAGGAAGAATCAGAAGAAATTAATCATTAGTTATTTTGTCTCCTTCTTtggaatcatttttatttacccCACAATCGCATTCAGGGATGTCAGAGGTCAAATGGCTATGAAAGATACACAATGTTAGATTTTCTTTGCAGGGTTCTGTGTAGAAGCTTTCCTTTCCCAGTCGAATTGCAGTAAGATTTCCAAGTGATCCCATCATTGGAAACACCAGCTATCATCATTAATTAGGATAAGCACCAAAtggataaatacaaaaaacgtAACGTCCGACAATCCAAGAAATGTACATATCTGTTATAGATAGTGTTGACCTCTCCTGATAAATACAAACACTGGTTTtcctccatatatatatatatatatagacacacacacataaatattgtatattttgttaccAACTTTCCATCTGCtttgaaaaaaagtgaaatgtcaCCAATACCCTCGCTCATCACTTCCTGCTGCCATTGTTCATTGGCTGGAGTTAGGATGTCACTGCAGAGCTCCAGTGAGGAACCTGGGCATCCCCGGGTGAGTGGGGGTCAGACTGGGGTCAAAGAGCATCTGCTCAGCTTCAGTCTACTCTGGAGTGAACTATAACGTGAGCAAAAGCCGTagtattgtataaataaatgagacgtgtgtgtgtgtgggaaatGTACTGACAGAAAAGGATCAGGATCATGGTATAGAAATTGCACTTCAGTGTGCTGTAATGCGAGAACTTATATCTGCTCAGGCATCTCATGGTCACCATTTAATCAGCCTCTCTCCTCTCCTACCGACGGAGGGCCATGTGGGGGAGAGGTTAACCCCAGAGCTCAGGGAAGCTGAGTGAGGAATGTGGCAGTATTCCCCCATGACTAGCAGGCACTTCTCACATTAACTCAAAACCTCAGGGCCCTGCTAATGATCCACAGCCTTTTAAAACCCACACCTTCCCACAACCAGGGCAACACAAAAAGGCTTTCGGCTGAAAGTGGATGCTCTAATATTACGGCAGAGTTTTTAACTTATATTTCAGGGGAAGGGAGGAGTGAGAGTTTTACTGGGGTCTTATCTTCAAATGGAGTGAATGCATACCAGGCCAACTTTAGCCCTCAACAACACTGGCAGCAGCTGTTCGCACAGGAATTCCCTTCACACTCGTCAAGTATCAGATTAACACGCGATAAGTATTAGTTAGTGCTGGAAGATAATGTCAGCTTCTGTAGTTGCAGTTGCTATGCTGGagtaaggaaaaaaaatgccacTTCAACCTGAGGAGAATGCTACTCCCCAGGCTATGTTCCTGTTCAACTGCTTAAGACGGCTGCAGTAGGGGCTGTCGTTCACTTGCAGAAGCCTGAAAACGAGAGGAGAAAGATTGAAAAGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99366 True 4439 lncRNA 0.39 3 23688730 23698248

Neighbor

gene id symbol gene type direction distance location
AMCG00010301 NA coding upstream 61308 23597317 ~ 23627422 (+)
AMCG00010299 NA coding upstream 177104 23480883 ~ 23511626 (+)
AMCG00010300 NA coding upstream 210352 23476398 ~ 23478378 (+)
AMCG00010298 klhl8 coding upstream 222414 23451192 ~ 23466316 (+)
AMCG00010297 NA coding upstream 238555 23446117 ~ 23450175 (+)
AMCG00010310 NA coding downstream 26143 23724391 ~ 23731715 (+)
AMCG00010315 shroom3 coding downstream 76273 23774521 ~ 23786354 (+)
AMCG00010313 NA coding downstream 114302 23812550 ~ 23836468 (+)
AMCG00010314 NA coding downstream 159432 23857680 ~ 23860700 (+)
AMCG00010319 atp8b1 coding downstream 199525 23897773 ~ 23917606 (+)
G79673 NA non-coding upstream 12773 23639053 ~ 23675957 (+)
G79660 NA non-coding upstream 58126 23628625 ~ 23630604 (+)
G79658 NA non-coding upstream 155029 23530634 ~ 23533701 (+)
G79597 NA non-coding upstream 350524 23337972 ~ 23338206 (+)
G79596 NA non-coding upstream 355257 23333264 ~ 23333473 (+)
G79749 NA non-coding downstream 144211 23842459 ~ 23884807 (+)
G79752 NA non-coding downstream 152778 23851026 ~ 23853436 (+)
G79820 fech non-coding downstream 573027 24271275 ~ 24275684 (+)
G79827 nars,LOC105905856 non-coding downstream 597140 24295388 ~ 24298215 (+)
G79829 nars non-coding downstream 602051 24300299 ~ 24301869 (+)
AMCG00010292 rchy1 other upstream 359184 23316015 ~ 23329546 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 985321 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 1309921 22357969 ~ 22378809 (+)
G79382 NA other upstream 1641188 22046118 ~ 22047542 (+)
AMCG00010224 NA other upstream 4059291 19604618 ~ 19629439 (+)
AMCG00010320 LOC104946060 other downstream 222512 23920760 ~ 24009853 (+)
AMCG00010333 NA other downstream 1134823 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 2294310 25992558 ~ 25996414 (+)
G80014 NA other downstream 2314236 26012484 ~ 26026303 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other downstream 2682219 26380467 ~ 26403020 (+)

Expression


Co-expression Network