G79749


Basic Information

Item Value
gene id G79749
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23842459 ~ 23884807 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU99462
atatgacagaAGACACACAGGGGTGTATaggacattgtattttattggtaTTGGTACCAGGTCTTGAGCAGTACAGAGGCAGTTATCATCATCAGGCTTCTGAAAGAGCTCTTTGCAAAAACATTGAACTTGTGATTAATGAAGAGCAAAGGAAAGATTAAGAAATTCAGctgaaaactttttttccctgttAATTATTACATCATATTTTGCAAAAGGAGAATTCTAAAGACACATCAGTCATTTCTGCTCTGCGACTGCTCCGTCGAGATTCTTGAAATGTGCTCAATCAGCAAATGGTCTTGAATTGTAAATGGTCTTAATGCTTTGTTATTTGTGATAGGATTCTTCTGCAATTGTTTAAAGATCAAATATGAGAATtaaacataatgaatacatGTAAGGTTGTGTGACAGGTACTACTACAAGGGCAGAGTACaacacaaatattgatttcttctatgtgaccatctgaatgttTTTCTCACAAGTCTGAATCTTTTCTGGGGCAGTTTACAGAGGTGTCCATCTATGCTGCCTTTGaacatacaacatacaaataCCTTAGACCTCTAATTTTTAAGATTTATTCTGTAAATATGTTCTGGTTAGTGTGAAACAACACAATCACAACACTCAATGTGATGAAAAAGGCTTAAgcaaggattaaaaaaaaaaaaaaaaaaaaaaaaagatttaaagcaAGGAACCTTTTAGGAACATCCTTCAATAACTATTTTTAGGTGAGGTAACAAAACATTACCCTTAACACTAATCTGAGAACAGGTGAATCAACATTAAAGACAGAGGGAAaaagtaaattactttttttggaacttttctgttttttttttttttttacttttttgtttttgtatttgtgctcAACAAATGGCTATGAAtcagcagcattttttttctgttattaatttCTTTTGGCTCAATTCAGTATAGCCTGGTAAGATAATGCCCTAGATCACTGCGTGTTTCGGACCCTACAGCTCTGATGGAGAGAGATGTTTCTGCTACATAACACCGACAGGCTGCAGAGGGGGGCAGGGTGAGGTGTTGCCTTCCTGCCGCACCAAAGTGGCACTGCAGGCCAGACTGACAGCCTCCACGCCCACCCCCTCCTGAGCACTGTCCTCGTTGTAGAGGCGCTTGATCCCGTCGAAGAACTCGTCCACCTCCATCTCCTCCACCTTGCGCTTGGCCGAGGCTTGCTTTCCACGGCCCAGCCGAGTGAAGGACGCTCCTCTGATGGGGGCTCCCGGGCGACGCTTGTCCCGGATGGCCTGTTTCACTGCTGGGTTGATGACCTCTGGGACCGGGGAGAGGGGAGGGCGCAGCGTGGCCCCTTGGTCACAGGGGGTCAGGCTGCGCCGCAGGGGCTGGTAGATGTATACAGTGTTGGGAGGCATGGAAACCTGGTGTGGAGACAGGCAACGTGCCACCAGCTCTCGACAGCGTATCAGCTGGGAACTATCGATCTGCTCTCTTCAGCAGGTCGATAGTGAGAGCGAGCCAATCAGGACAGCGCTTTTCCAGTTCTAAAGTGATGACAGCCAGTGCCAGCATAGAGCCCTTAAACTGCAGCAGTGTGTGATCGGTCTGGCAGTGATGGAGCTGCCGGGTGAGCAGAGACACATGCTGAGACGGGCTCATTCCTGGCACGATGGCAGGGACCTGGGATCTGCTAGACAGCACCATCGCATGGAACTAGACAGAGA
>TU99463
atatgacagaAGACACACAGGGGTGTATaggacattgtattttattggtaTTGGTACCAGGTCTTGAGCAGTACAGAGGCAGTTATCATCATCAGGCTTCTGAAAGAGCTCTTTGCAAAAACATTGAACTTGTGATTAATGAAGAGCAAAGGAAAGATTAAGAAATTCAGctgaaaactttttttccctgttAATTATTACATCATATTTTGCAAAAGGAGAATTCTAAAGACACATCAGTCATTTCTGCTCTGCGACTGCTCCGTCGAGATTCTTGAAATGTGCTCAATCAGCAAATGGTCTTGAATTGTAAATGGTCTTAATGCTTTGTTATTTGTGATAGGATTCTTCTGCAATTGTTTAAAGATCAAATATGAGAATtaaacataatgaatacatGTAAGGTTGTGTGACAGGTACTACTACAAGGGCAGAGTACaacacaaatattgatttcttctatgtgaccatctgaatgttTTTCTCACAAGTCTGAATCTTTTCTGGGGCAGTTTACAGAGGTGTCCATCTATGCTGCCTTTGaacatacaacatacaaataCCTTAGACCTCTAATTTTTAAGATTTATTCTGTAAATATGTTCTGGTTAGTGTGAAACAACACAATCACAACACTCAATGTGATGAAAAAGGCTTAAgcaaggattaaaaaaaaaaaaaaaaaaaaaaaaagatttaaagcaAGGAACCTTTTAGGAACATCCTTCAATAACTATTTTTAGGTGAGGTAACAAAACATTACCCTTAACACTAATCTGAGAACAGGTGAATCAACATTAAAGACAGAGGGAAaaagtaaattactttttttggaacttttctgttttttttttttttttgtcttttttttttttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99462 True 1730 lncRNA 0.45 2 23842459 23844584
TU99463 False 885 lncRNA 0.32 2 23842459 23884807

Neighbor

gene id symbol gene type direction distance location
AMCG00010313 NA coding upstream 5991 23812550 ~ 23836468 (+)
AMCG00010315 shroom3 coding upstream 56105 23774521 ~ 23786354 (+)
AMCG00010310 NA coding upstream 110744 23724391 ~ 23731715 (+)
AMCG00010301 NA coding upstream 215037 23597317 ~ 23627422 (+)
AMCG00010299 NA coding upstream 330833 23480883 ~ 23511626 (+)
AMCG00010319 atp8b1 coding downstream 12966 23897773 ~ 23917606 (+)
AMCG00010321 wdr7 coding downstream 196486 24081293 ~ 24123623 (+)
AMCG00010322 st8sia3,LOC106580045,LOC105014695,LOC106572171,LOC106585377 coding downstream 312669 24197476 ~ 24214335 (+)
AMCG00010323 onecut2,LOC106572165 coding downstream 343741 24228548 ~ 24229774 (+)
AMCG00010324 NA coding downstream 366193 24251000 ~ 24251582 (+)
G79675 NA non-coding upstream 144211 23688730 ~ 23698248 (+)
G79673 NA non-coding upstream 166502 23639053 ~ 23675957 (+)
G79660 NA non-coding upstream 211855 23628625 ~ 23630604 (+)
G79658 NA non-coding upstream 308758 23530634 ~ 23533701 (+)
G79597 NA non-coding upstream 504253 23337972 ~ 23338206 (+)
G79820 fech non-coding downstream 386468 24271275 ~ 24275684 (+)
G79827 nars,LOC105905856 non-coding downstream 410581 24295388 ~ 24298215 (+)
G79829 nars non-coding downstream 415492 24300299 ~ 24301869 (+)
G79846 NA non-coding downstream 716325 24601132 ~ 24650632 (+)
G79849 NA non-coding downstream 839027 24723834 ~ 24727757 (+)
AMCG00010292 rchy1 other upstream 512913 23316015 ~ 23329546 (+)
G79475 dusp4,LOC107703586,LOC107706494,LOC107591703,LOC107708543,LOC107681175,LOC107589246 other upstream 1139050 22699742 ~ 22703409 (+)
G79420 rpl17,LOC107579731 other upstream 1463650 22357969 ~ 22378809 (+)
G79382 NA other upstream 1794917 22046118 ~ 22047542 (+)
AMCG00010224 NA other upstream 4213020 19604618 ~ 19629439 (+)
AMCG00010320 LOC104946060 other downstream 35953 23920760 ~ 24009853 (+)
AMCG00010333 NA other downstream 948264 24833071 ~ 24837552 (+)
AMCG00010366 tal2,LOC106585373,LOC106580046 other downstream 2107751 25992558 ~ 25996414 (+)
G80014 NA other downstream 2127677 26012484 ~ 26026303 (+)
AMCG00010369 snx30,LOC107569385,LOC106591923 other downstream 2495660 26380467 ~ 26403020 (+)

Expression


Co-expression Network