XLOC_006062 (qrfpra)


Basic Information

Item Value
gene id XLOC_006062
gene name qrfpra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30215765 ~ 30235220 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011967
TCAGTGTGTTGTACAGCGTGTTTAGACAGCGAGTGTGAAATACTCAAACAGGTGTAGAGACACAGCCGATGTGTCAGAAGAAATACTCCGCATACTCCTGCTGCTGATTCAGTGTGAAGAGGCGCGAAGAGCAGAACTGACTAACAACAGCTGTAAAACTTTGATTTCTTTCTGGTCCCATTTCAAAGACGAGCATTATACATGGGGGATAAGAAGATTACTCCTGAAGTGCTGGAGCAACTACTGCAGTTTTACAATCTTACCCGTCAGGAGTTCATCGAGACGTACCAGATCGAGCCGCTGGTTTACATCCCGGAGTTGCCCGCTGGCGCCAAAACTACGTTTGTTATCGTGTACACGGTGATTTTTCTGCTGGCTCTCGTCGGAAACAGTGTCGTTGTGTATATTGTGTTAAGAAAGCGAGGGATTCAGACCGCCACAAATATCTTCATCTGCTCTCTAGCCGTCAGCGACCTGCTCATCTCTTTCTTCTGCATCCCATTCACTCTCCTGCAGAACATCTCTTCTGAATGGTTCGGCGGTGTGCTGGTGTGTAAAACTGTCCCGTTTGTTCAGACCACTGCTGTAGTGACCGGCATCCTCACAATGACCTGCATCGCTGTGGAAAGATACCAGGGCATCGTACATCCTCTGAAAATCAAAAGACAATGCACCCCACAAAGAGCATATCGAATGCTGGGTGTGTAGTTTTTCACAACCATTACCCTTCCAttgtttattcacattttattcaGTTTGGCAGTATTTGATCATGCATCTGTGCATAAAGCACCTCAATAATGGAGTTTCATTCTCTGTTAGGGGTTGTCTGGATCGCAGCCATGATGGTTGGATCACCAATGCTTTTTGTTCAACAATTAGAGGTACTCTTTGGATTATTTGGCTGAAATGTTCCATTTGAACcttttttcattcaaaacatctCTGTCCAAACATTAGTTTGTATTCAGTCACTGGCACCGCAGCACCGATGTGCACATTTTTATGGGTGCATTACCATTACAAAAAGATTACTCCAGGTTTCACTTGTTTATGCAAAACAAAATTTATGCAAGTGCAGTGGTTTCTATCAACAATGCTGACTATCAAT
>TCONS_00011968
AACAGCTGTAAAACTTTGATTTCTTTCTGGTCCCATTTCAAAGACGAGCATTATACATGGGGGATAAGAAGATTACTCCTGAAGTGCTGGAGCAACTACTGCAGTTTTACAATCTTACCCGTCAGGAGTTCATCGAGACGTACCAGATCGAGCCGCTGGTTTACATCCCGGAGTTGCCCGCTGGCGCCAAAACTACGTTTGTTATCGTGTACACGGTGATTTTTCTGCTGGCTCTCGTCGGAAACAGTGTCGTTGTGTATATTGTGTTAAGAAAGCGAGGGATTCAGACCGCCACAAATATCTTCATCTGCTCTCTAGCCGTCAGCGACCTGCTCATCTCTTTCTTCTGCATCCCATTCACTCTCCTGCAGAACATCTCTTCTGAATGGTTCGGCGGTGTGCTGGTGTGTAAAACTGTCCCGTTTGTTCAGACCACTGCTGTAGTGACCGGCATCCTCACAATGACCTGCATCGCTGTGGAAAGATACCAGGGCATCGTACATCCTCTGAAAATCAAAAGACAATGCACCCCACAAAGAGCATATCGAATGCTGGGGGTTGTCTGGATCGCAGCCATGATGGTTGGATCACCAATGCTTTTTGTTCAACAATTAGAGGTGAAATATGACTTTCTGTATGATAACCATCATGTGTGCTGTCAGGAGCGCTGGAGGTCGAGTGCCCACAGGAAACGATATGCAACATTCATCCTAGTATTCCTCTTTCTGCTGCCTCTCGCAGCCATGCTCATACTCTACACCAGAATCGGGATTGAGCTCTGGATCCGCAAACAAGTTGGAGACTCTTCAGTCCTCAATGCTATGAATCAAAGGGAGGTCAGCAAAATAGCCAGAAAGAAGCGAAGAGCAATCAAGATGATGGTCACCATTGTCGTGCTGTTTACTGTCTGCTGGGCTCCCTTTCATACAGTTCACATCCT
>TCONS_00011969
GTCGTGCTGTTTACTGTCTGCTGGGCTCCCTTTCATACAGTTCACATCCTGTTTGAGTACAGTAAGAACATTTCAGTGTTCAGTAAAATATCTGTGCATTTTACAGTCCTCTTAACTCTCCTGtttacttgtttttgttttcaggtTACCTGAACAAGAAGTATGATGACGTCACAGTTAATATGATTATAGCTGTCGCACAGGCCATAGGCTTTTCAAATTCATTCAACAATCCCATTATCTATGCTTTTATGAATGAAAACTTCCAGAAGAACTGCATGTCCACGCTTTCTGTTTGCATTAGGAGGTCCAGCCACCGTGTGGACGTAAAGGACAAATCAAAAGTGCTTTTTTAACGACACAGTCACTGTCAGGACCAGAAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGattGTCGATGTCCTGCATCCGGGCAAAGCAACAGTCCCTAAGACAGAGATCAGGGAAAAGCTTGCAAAAATGTACAAAACCACCCCTGATGTGGTGTTCGTCTTTGGCTTCAAAACACAGTTTGGTGGTGGCAAGACAACAGGGTTCGGCATGATCTACGATTCTTTGGACTACGCCAAGAAGAATGAGCCCAAATACAGGCTGCAGAGGCATGGCCTTTATGAGAAGAAAAAGACATCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTTAGAGGCATCAAGAAAGCATCTGTTGGTGCTTCTGGCAAAAAGTAAGACCTTCAGGGAAGACCATCAGCCTGAAAATGTTCTTGTACATTGTCATcgaataaattctttaaaaaaagtg
>TCONS_00011970
GGGCACCTACGGGTCCTTCTTCCTTTTCCTCGTCCCTGAGCGAGCCGACGCCAAGATGAACGACACAGTCACTGTCAGGACCAGAAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGattGTCGATGTCCTGCATCCGGGCAAAGCAACAGTCCCTAAGACAGAGATCAGGGAAAAGCTTGCAAAAATGTACAAAACCACCCCTGATGTGGTGTTCGTCTTTGGCTTCAAAACACAGTTTGGTGGTGGCAAGACAACAGGGTTCGGCATGATCTACGATTCTTTGGACTACGCCAAGAAGAATGAGCCCAAATACAGGCTGCAGAGGCATGGCCTTTATGAGAAGAAAAAGACATCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTTAGAGGCATCAAGAAAGCATCTGTTGGTGCTTCTGGCAAAAAGAAGTGAAAGGCTTGAGTTTTCAGGAGAAGTAAGACCTTCAGGGAAGACCATCAGCCTGAAAATGTTCTTGTACATTGTCATcgaataaattctttaaaaaaag
>TCONS_00011971
CTACGGGTCCTTCTTCCTTTTCCTCGTCCCTGAGCGAGCCGACGCCAAGATGAACGACACAGTCACTGTCAGGACCAGAAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGattGTCGATGTCCTGCATCCGGGCAAAGCAACAGTCCCTAAGACAGAGATCAGGGAAAAGCTTGCAAAAATGTACAAAACCACCCCTGATGTGGTGTTCGTCTTTGGCTTCAAAACACAGTTTGGTGGTGGCAAGACAACAGGGTTCGGCATGATCTACGATTCTTTGGACTACGCCAAGAAGAATGAGCCCAAATACAGGCTGCAGAGGCATGGCCTTTATGAGAAGAAAAAGACATCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTTAGAGGCATCAAGAAAGCATCTGTTGGTGCTTCTGGCAAAAAGTAAGACCTTCAGGGAAGACCATCAGCCTGAAAATGTTCTTGTACATTGTCATcgaataaattctttaaaaaaagtggATACTGATGTCTTTGAGTGCTCAATCAGGAATGCAAGATTACCCTTATTTCTTGAATGTTTATTAACATGGTTTATCCAAGGATTAAGGTTTTAAGGATACAAGTCTGAAGAGATTGTTAATTCATTCCATTGGAATCTTACTACAGATGAACATTTGTGAATTTAGGTACATCACCCCTGCCTGCTGTCTTGCTATTGAACTAGATGATAATTTATAAATTCACCTGACCTTCTCCACACTCTGCTGTTTAAAGATGTAGAGATGATTATAAACCATTTCCCTttacattatttttcatttatacaaaaactatttacagaattAAAGAAGGGGAGCAGACATCTTTATAAATAAAGATGGAATAGTCAAGGTTTTATAACAGGAAAGCATTGTAGAGTAGGAGTACTACTCAATCCATTCAGACAGAAAACtgacaaatgtatatatttgatcatgtaatttaagaaataaattgtataagaactacatttttaacaatgttcaacttgttttaaaaaagcaaCCGGTTGAAAAAAGTAcaactagagttttcttgttttgatgcataatggctaagaaataactaaatttaattgtgtatttttttggTGTTGTggcaaactaaaactaaaaaacgGACCATTAGAGAAAAGCCTTGGTGTTCAGCTCTGCATAAATCTAAAACTTCATTCATGATGATCTTAAAAGGGTCtgtaagtcttaaatttgacttggtgaaacctgcagagaaACCCTGTTAAAATGATGGTTGATCACTAttgtgtctttaaaaaaaaaaataaagttcacaCATTATTGTCA
>TCONS_00011972
TTTCCTCGTCCCTGAGCGAGCCGACGCCAAGATGAACGACACAGTCACTGTCAGGACCAGAAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGattGTCGATGTCCTGCATCCGGGCAAAGCAACAGTCCCTAAGACAGAGATCAGGGAAAAGCTTGCAAAAATGTACAAAACCACCCCTGATGTGGTGTTCGTCTTTGGCTTCAAAACACAGTTTGGTGGTGGCAAGACAACAGGGTTCGGCATGATCTACGATTCTTTGGACTACGCCAAGAAGAATGAGCCCAAATACAGGCTGCAGAGGCATGGCCTTTATGAGAAGAAAAAGACATCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTTAGAGGCATCAAGAAAGCATCTGTTGGTGCTTCTGGCAAAAAGGTAATGTTTATCTTCAGTATCCTCTGTAAGATTGAGAACCCTTTTTCTATCTTCTGCCTGTCATGGATGTTTTTGTCGTCATTGTCTTAGTTTTAATGTGTAATTTGTCATCTTTCCTCCTTGATCAAATGTACTTCTGGACTATAGAAGGTAAACGCTTTCACAAGTAGACTAACTGCTGTGGAAGGAGAGTCTGGAGTGATCTGTAAAGTTAACTCCAAACATTTAGCTGCTTTGTTCATGGCTAATGCTATTGACCCCAGTTTATGGTTTGAAATAATTCTTACAGGCACCTTTATATAATCCTACTTGAGTAGTGAGTAGAGCGCTTACTAATAGTGATGTGCTGACCGTGTAGGAATCAGTAGCACAAGCAAAATAGCAGGATTTACAAATTCATGCTGCAGTCAAAAAGA
>TCONS_00011973
GAGCCGACGCCAAGATGGTGAGTCGAGTGGggaaaaatgaatataataatctGATTAAATCTTCACCATCCGACGACGTAATAGTGTCATTTCGAGCGTAAAACACAATAAACATATATTATGGCCAATTTGTAGCTTCATTTGAACGATGTGCTGATTATTACCACAACGAAAGATGATAGTTTTCCAGTTCGGACCATCGTGTTACTCTTATCCAGTGCACGGGCAATGAAGAAAAACAATATTAAACGACACAGTCACTGTCAGGACCAGAAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGattGTCGATGTCCTGCATCCGGGCAAAGCAACAGTCCCTAAGACAGAGATCAGGGAAAAGCTTGCAAAAATGTACAAAACCACCCCTGATGTGGTGTTCGTCTTTGGCTTCAAAACACAGTTTGGTGGTGGCAAGACAACAGGGTTCGGCATGATCTACGATTCTTTGGACTACGCCAAGAAGAATGAGCCCAAATACAGGCTGCAGAGGCATGGCCTTTATGAGAAGAAAAAGACATCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTTAGAGGCATCAAGAAAGCATCTGTTGGTGCTTCTGGCAAAAAGTAAGACCTTCAGGGAAGACCATCAGCCTGAAAATGTTCTTGTACATTGTCATcgaataaattctttaaaaaaagtggA
>TCONS_00011974
CCGACGCCAAGATGAACGACACAGTCACTGTCAGGACCAGAAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGattGTCGATGTCCTGCATCCGGGCAAAGCAACAGTCCCTAAGACAGAGATCAGGGAAAAGCTTGCAAAAATGTACAAAACCACCCCTGATGTGGTGTTCGTCTTTGGCTTCAAAACACAGTTTGGTGGTGGCAAGACAACAGGGTTCGGCATGATCTACGATTCTTTGGACTACGCCAAGAAGAATGAGCCCAAATACAGGCTGCAGAGGGTATGCCATTCACTGATGCTTATAGTGCTGCATGAttaatatataaagttgaagtatTAAGGTACCACCTTTCACATCATTGTCTTAGACTGAGAAAACAGACTTGTgagttctctttttttttctgtctgttttaaTTGCTTTCTAAAGCAAGTTCTTCAAACATTTAAGAGAGAGTTTATCTATAAATTAAAACCCATTAACTCACCCTTAACATGTTTCAAACCTTTTAGTTTTGTTCTGATGAACCCAAAATTTGTTTTGAAGATAGCTTAAACCCTGTAACATTGTTTTCTGTAAGAGGTAAaactaatactatggaagtcaggggTTTctggttttcagcattattaaaaaaatcattggTTTAAAAAGAACCTCAAAGCTGAAaggagtaaataatgagtaaatgattacttatttttaggtgaactatccctttgaagtTTGGAgaacttaattattttacaaaacattgtaaaattcatttaaataactaatttaaagataaaatgtagactgaaaatattattgttaatgttgTGTAAAGTCGCAGTAGAGTGTGGCATCTTATGGCTGTTATAGCATCCAAAGGAAATTTGTGCCAAAAGTCAAGTTTGACAATTTAAGCACGAATTATAAAAACACAAAGGCTGTTATGTCGTATGTGTTGCTGTGTGCCAGACTGTAGCGTGGCAATTTGTGCTTTAATGTAAATTTGGGAGCACAATATTACAACCAGTTTCCTAAATTTGTAACAAGATTCGTATAAACCATTTTCTGCCAGCAAAACAAAATTCTGTTtatgacaaaaaatacatttagaagtAATAGTAATTTCACTTATGGTTGATCACAATTGTGTGGCTCCATAAATATTACACAGCAAACCATTATCAGAGAAGAAAATGAAGGAACGTtgatttttatcaaattttagaatgttcagggtttttttttctgacaaattaAGCAGACGTTTTTAGCAATCgacaaggtttttatttttatatatatatatatatatatatatattttttttttttttgaaaattgagTGGACCTTTTTACTATTATTCCCATTTCTACTGTTAAAATTACTGTCGAGTGCCCAATtgcattttctaaaaaaatacatatttatgtttTGCAGCTCTTCATCAAACTGCTAGGTTTTGCCCATTTGTCAGC

Function

symbol description
qrfpra Enables G protein-coupled receptor activity and neuropeptide receptor binding activity. Acts upstream of or within locomotory behavior and sleep. Located in cytoplasm and plasma membrane. Is expressed in hindbrain nucleus; midbrain nucleus; and ventral hypothalamic zone. Orthologous to human QRFPR (pyroglutamylated RFamide peptide receptor).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0030431 sleep biological_process
GO:0007626 locomotory behavior biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040109-5 Predicted to be a structural constituent of ribosome. Acts upstream of or within definitive hemopoiesis and primitive hemopoiesis. Predicted to be located in ribosome. Human ortholog(s) of this gene implicated in Diamond-blackfan anemia 3. Orthologous to human RPS24 (ribosomal protein S24).
ZDB-GENE-090313-105 Enables G protein-coupled receptor activity and neuropeptide receptor binding activity. Acts upstream of or within locomotory behavior and sleep. Located in cytoplasm and plasma membrane. Is expressed in hindbrain nucleus; midbrain nucleus; and ventral hypothalamic zone. Orthologous to human QRFPR (pyroglutamylated RFamide peptide receptor).

Ensembl:

ensembl_id ENSDARG00000039347 ENSDARG00000039349

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011967 False 1111 mRNA 0.44 2 30215765 30219794
TCONS_00011968 False 940 mRNA 0.47 5 30215910 30225311
TCONS_00011969 False 820 mRNA 0.42 5 30225262 30234395
TCONS_00011970 False 551 mRNA 0.46 6 30228077 30234393
TCONS_00011971 False 1343 mRNA 0.37 5 30228083 30235220
TCONS_00011972 False 840 lncRNA 0.43 4 30228101 30233680
TCONS_00011973 False 715 mRNA 0.42 5 30228118 30234397
TCONS_00011974 True 1481 lncRNA 0.34 3 30228121 30230350

Neighbor

gene id symbol gene type direction distance location
XLOC_006061 pald1b coding upstream 1397 30169233 ~ 30214368 (+)
XLOC_006060 eif4ebp2 coding upstream 46868 30163515 ~ 30168897 (+)
XLOC_006059 spock2 coding upstream 83509 30054996 ~ 30132256 (+)
XLOC_006058 dnajb12a coding upstream 169012 30035253 ~ 30046753 (+)
XLOC_006057 cuedc2 coding upstream 279506 29925397 ~ 29936259 (+)
XLOC_006063 AL929330.1 coding downstream 16521 30251741 ~ 30251857 (+)
XLOC_006064 zmiz1a coding downstream 186252 30421472 ~ 30570859 (+)
XLOC_006065 AL844152.1 coding downstream 276387 30511607 ~ 30511723 (+)
XLOC_006066 ppifa coding downstream 336952 30572172 ~ 30575799 (+)
XLOC_006067 NA coding downstream 441605 30676825 ~ 30677643 (+)
XLOC_006056 NA non-coding upstream 323945 29889189 ~ 29891820 (+)
XLOC_006054 CT025909.2 non-coding upstream 460338 29755293 ~ 29755427 (+)
XLOC_006053 CT025909.1 non-coding upstream 624650 29590994 ~ 29591115 (+)
XLOC_006049 NA non-coding upstream 766044 29446817 ~ 29449721 (+)
XLOC_006044 NA non-coding upstream 1132474 29083087 ~ 29083291 (+)
XLOC_006071 CR762493.1 non-coding downstream 601436 30836656 ~ 30836776 (+)
XLOC_006074 NA non-coding downstream 685334 30920554 ~ 30928661 (+)

Expression


Co-expression Network