AMCG00010792 (stk40)


Basic Information

Item Value
gene id AMCG00010792
gene name stk40
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 114818 ~ 126599 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010792
ATGCTGAGCATTGAGAGCAACCATGTGGCGCTTGAGCGCAGTCTTGTCCTGGTTGTCCATTCAGAGCTGAATAGGATGTCCAAACGCAGAGCATCGGAGAGGGGTGCAGGGGAGACCTCGGCCAGGGCCAGCAAGATCCTCTGCACAGGAATCACAGGAAGCAATGCCAAGAGAGCCGGGCCCTTCATACTAGGACCCCGGCTCGGGAACTCCCCGGTGCCAAGTATAGTCCAGTGTCTGGCCAGGAAAGATGGCACGGATGACTTCTACCAGTTAAagATCCTCACTCTGGAAGAAAGGGCGGACAAGGCCGTGGAGACGCAGGAGGAGCGCCAGGGCAAGATGCTGCTGCACACCGAGTACTCCCTGCTGTCTCTGCTGCACAGCCAGGATGGGGTGGTGCATCACCACGGCCTGTTCCAGGACCGGGCCTACGAGATCATTGAAGACCATGAAGCCAACAAAATCCGAAAGATGAAGAAGCGGATCTGCCTCGTGCTCGACTGCCTCTGTGCTCACGATTTCAGTGACAAGACGGCGGACCTCATAAACCTGCAGCATTATGTCATCAAGGAGAAGCGGCTCAGCGAGAGGGAAACCATTGTCATATTCTACGACGTGAAAAACATTGTTCATCGAGACCTGAAGCTCGGGAACATGGTGCTCAACAAGAGGACTCATAGAATAACCATCACCAACTTCTGCCTGGGGAAGCACCTGGTGAGTGAGGATGACCTTCTCAAGGATCAGCGGGGAAGCCCGGCCTACATCAGCCCAGATGTGCTCAGCGGCCGGCCGTACCGCGGGAAGCCCAGTGACATGTGGGCCCTGGGCGTGGTGCTTTTCACGATGCTGTACGGCCAGTTTCCCTTCTACGACAGCATCCCTCAGGAGCTCTTCCGGAAGATTAAAGCTGCCGAATACACCATCCCCGAGTACGTGCGCTGCTCGGCCCTCTTCATGGGGGACGGGCGGGTGTCGGACAACACTGTGTGTCTCATTCGCAAGCTGCTGGTGCTCGACCCCCAGCAGAGACTGACGGCGGCCGAGGTCCGGGAGTCTCTCAGCAGCATCATTGCATCATGGCAGTCCATGTCTTCTCTCAGTGGTCCACTACAGGTCGTGCCTGACATCGACGACCAGGTCAACCACCCCGAACATCTCCAGGAGAGCTCAGTACGCAAGGCCAAGGTGATGGAGGAGTCCTCGCAGTACGAGTTCGAGAACTACATGCGGCAGCAGCTGATCCTGGCCGAGGAGAAGAACACTATCCACGAAGCCAAGAGTTTCCTCCACAAGCGCCAGTTCGGCAGCATCCCCCCGGTGCGGCGCCTGGGCCACGATGCACAGCCTGTCAGCCCCCTGGACGCCGCACTCCTCGCCCAGCGCTTCCTGCGGAAGTGAGCCTCGGCCGGCGGTGCCGGCGCTGTGCCCGCGGGTCGGCCCATCGGAGCAATAGAGTCATGTAGCAGTCCACCCCCGCTCTATTGAGGATCCCTGGGGCCGCCGGCGCCCGTGGAGTACGGTCTGctcttttaattgaaatgatctAGATTAATTCTCTAATTGTGACTGTAAATCTACCTCTCTTCATCTTTTAATAATGATCCGGTCCTCAGGACTCGGCTCGCGAGACGGCGACGTCGGCAAAGCATTATCTTCGGTGCGTCTGGTAGTATGGAGTCTCACTGACCGCAGCTCTCCGTATGATCTGAATAagcttattttcctttttctacaATAAAGGTAGCATTGTTTTGGGTTGCGTGTTGTTTCTGGTCTTTTGGCAAGCCGCGTTTTAAAGACGCTAAGTATGGTGACGTAAAACCACCGTCCCACCCTGCGTGAGATCTGTAAAAGCACGGAACCGCTGTAGTCCTGTGCATCTGTGCAGAAACATCACGGGCTGCAGCGATGCAGAGCTGTTCAGTCAGGCCATGATTCTGTTCGGCTATGAAATCATGTCACGTGACCGCTTCCTGTAGCAGTGGACACGCATGTCTGTGTGCAAATATATAACAAACGTGTTGATTTAGGCAACCAACCTGATCTGGGGTTAATGGAGCCTCTTTAAAATGCCCGTTTGCCAAGGCAAGTGACCATTAGCTTCTCCTCTTTGTGTCGATTCACTTGTTAGTTTTTTCAAAGCTATACATAtaagtatgtgtatatgtatgtatgtatgtatgtatgtatatgtgtgtct

Function

symbol description
stk40 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm and nucleus. Is expressed in axis; hindbrain neural plate; mesoderm; optic primordium; and optic vesicle. Orthologous to human STK40 (serine/threonine kinase 40).

NR:

description
PREDICTED: serine/threonine-protein kinase 40

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K16312 STK40, SHIK; serine/threonine-protein kinase 40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010792 True 2206 mRNA 0.54 12 114818 126599

Neighbor

gene id symbol gene type direction distance location
AMCG00010795 NA coding downstream 2302 73277 ~ 112516 (-)
AMCG00010793 NA coding downstream 45223 43198 ~ 69595 (-)
AMCG00010796 NA coding upstream 380 126979 ~ 133324 (-)
AMCG00010790 NA coding upstream 7133 133732 ~ 134094 (-)
AMCG00010791 NA coding upstream 24475 151074 ~ 156797 (-)
AMCG00010797 NA coding upstream 30891 157490 ~ 193075 (-)
AMCG00010798 grik3 coding upstream 438632 565231 ~ 577174 (-)
G102332 NA non-coding upstream 4751 131350 ~ 131582 (-)
G102360 NA non-coding upstream 160674 287273 ~ 287693 (-)
G102362 NA non-coding upstream 161150 287749 ~ 287971 (-)
G102367 NA non-coding upstream 360674 487273 ~ 487531 (-)
G102372 NA non-coding upstream 433835 560434 ~ 560797 (-)
AMCG00010794 NA other upstream 9770 136369 ~ 149829 (-)
G102434 NA other upstream 848954 975553 ~ 978127 (-)
AMCG00010806 NA other upstream 907231 1033830 ~ 1034874 (-)
AMCG00010843 NA other upstream 2355275 2481874 ~ 2496446 (-)
G102762 NA other upstream 2613217 2739816 ~ 2778023 (-)

Expression


Co-expression Network