AMCG00010794


Basic Information

Item Value
gene id AMCG00010794
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 136369 ~ 149829 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010794
GGTAAGTCAATATATTCCTTTTTAATTCTTACGTCCTTTACTCACAAATGTAACTGTTTTACATGTGGAGTTAACTCGTTAAAAGTAAACGGTACAAAGAAATATGAATTGCTTTATTTCAATGTGTGGTTGAAACTACAGTTATAAACTGTCAGATTGAAATTCACTTTTATAAATGTGATGTTAATTGCATATTAATTATTCTAGATATAGATATTTGGGGTAAGGAAGTATACAATTAGGAAGATAGATATACTTCACATAAGTACATTTTGGAAACCATGTTCTTCTCTATTCATATTTTAAGACATTGACAAGGAAGAAGTTcagtaaaataaaggaaataagaGCAATGGTATATATTGATCCCAGTGATAACTGGATCCTCTTGACTTGTTAATTAACCTGTATCTGTGCGGAGGTCAGTTACTGCACTGGGCATTTATGTGAGCtgatattgtaaaatgttaaaatgagtTTCTCAACAGAAGAGTAACTGAATAAATCtccatcaaatacattttctcgattttttgttttccgttttttctttccaaacttggaataaaagtgtattttgagTTTTCACAGTTTTATCTGCAATCCTCAGCCCAGCGTCTGTTGAAATGTCGAGCCCAGCCATCACTCAGCAGCCGGCCGCCTCCGCCTACGGCACCAACGTGCAGACGGGGGACTGGAGCACCGGGCTGTGCTCCTGCTGCAGCGACGGGCTCGTCTGTGCATTGGGCTTTTTCTGTCCCGTGGCGCTGGGCTGCTACACTGCGCATCTCTATGGAGAGAACATCTGTCTGGGATGCCTTCCAGGGGGGGCCACAGCTCTGAGAACCCACATGAGATTGACATATGGCATTCAGGGGACGATCTGCAACGATGCGCTGATGGTGTTCTGCTGTGGCTTCTGCGAGACGTGCAGGATGGCTCGGGAGATCCGTATCCGCAGTGGAGAAGTGTGACCAGGATCCTGTGTGGAGTAGCGGTTGGAGCTCATGGCTCTGGACTCTGGGGTCGTGGGTTTAATTGCTGcttttgtacccttgagcaaagtactttaTCCAGAGATCCTCGatctaaactgttttgtttagaTCGAGGATCTTTGTTCACATTTGATATGTGTTGGCAGGTGATTTGGAAAAGATCAAAATAGGCCATTGTCTGTGACTTTTGTATTTAGTACGTTTTAGACCTTTTTGCCAATTTAAATAAACGGTTAACAGTGAAACACAGTCCACATTGATCAGTCTCGGATGTTTTAACTTTCTTCTCACGTATTTCCCTTTTTTAGTGTTGCATTGTGTACTTGTATCATGCAAGTCCTGCCAATAAACAGTaataacattgtgtgtgtggattaCAGCAGCTTCGAAAGTGGGTTTGTAAATGTCTTGAGAAAATGACTTCAATCTCAACCTGCAACAGTGTGCAGTTCAGtgcatgaataataaacagCCTGACTAGGGTCTCTGGTGAGCACGTCGTTATTGTCCTTAATGATAGAGCTGCTTCGACTCTCAGGACCCTCGCCTGGGGCGGAGAGTGCGTGATGCGTGCGTGATGCGTGATGCGTGATGCGTGGCTGCAGTAACGCGAGCCCTGATTGGTTCATCTGGGTGACCTGGCAACCACGCTGACGTCCGGACGCTGTTTCCTGGCGGCATCAGCAGCAACGACCTCAGTACCGGTACCGCATCACACCCGCCCACAGCTCCGGTACCGCCCGCCGGACCGCATCACACCCGCATCCAGCGGCCCTCACACACACGGCGCCATGTCGATGCGGACGCTGCCGCTGCTGTTCATTAACCTGGGCGGAGAGATGCTCTACATCCTGGACCAGCGCCTACGAGCGCAGAACATCCCGGCCGACAAGGCCAAGAAAGTTATGAATGACATCATCACTACGATGTTTAATAAGAAATTCATGGAGGAGCTGTTTAAACCTCAGGAGCTCTACTCCAAGAAAGCCCTCCGGACGGTGTTTGACCGACTCGCTCACGCCTCCATCATGAGACTGAACCAGGCCAGCATGGACAAGCTGTATGATCTCATGACCATGGCTTTTAAATACCAAGTGCTGCTTTGCCCCCGGCCCAAAGACATCCTCCTGGTCTCATTCAATCACATGGATGCCATCAAGGACTTCATAAGAGATTCCCCAAGCATCCTCAACCAGGTGGACGAGACTTTCCGTCAGCTCATCGAGGTGCGTCTAGAAACCCAGTCTCGCCGTCATCCTCTTCTCATGGTCATTGAAAGTGTTTTCCTCCTTCATCTGATTCTGATGTTTAATAGCAATGGGGAGGAAATAAAACGGTCTGTGTTCCACAGCGGTGGCAACTACACGAGCCCCCTGAGGGAAGGATCCTTCGACCTTTTTGGAGACAGAGTGATCAAACTCGGCACCAACATGTACAGCGTCAGCCGCCCTGTAGAGACACACATGTCAGGGTCGTCCAAAAGCTCAGCGTCACACACCAAGGAGAACGCGGCTCCCAACCCCCTGGCCAAGGAGGAGCTCAACCTGCTGGCCAGACTAATGGGGGGTCTGGACGTGAAGAAGTCCAGCTCCGACGCCGGGTTCAGAGTCAATCTGTTCGCCACcgacgaggaggaggaGGAGAGAGCAGTGTGTGGAGTGATATGGGGGGCTGCTGTGGTCTGCGGAGGTCCCCTAGTAAAGAAGAGCTGTGTGTTTCAGGACCAGCAGGCCAACGCAGAGCTGGCACGCATCATGGGCGAGTTCACGGAGGAGGCTAGGTCGCCCCAGAGCCCGGGCAGCAAGGGGGACGACCTGCTGGCGCTGATGGACGGCCTGTGA
>TU127810
CACAATTGTGCAAGTTTGTTCCGCTTTGCGAGGCTAGTCATTTCCTGTGTTTAAATATCACCCCCAGTTCTGCAGAGGGCCAGTGCAACGTATGTGTGTGCCCAGCGTCTGTTGAAATGTCGAGCCCAGCCATCACTCAGCAGCCGGCCGCCTCCGCCTACGGCACCAACGTGCAGACGGGGGACTGGAGCACCGGGCTGTGCTCCTGCTGCAGCGACGGGCTCGTCTGTGCATTGGGCTTTTTCTGTCCCGTGGCGCTGGGCTGCTACACTGCGCATCTCTATGGAGAGAACATCTGTCTGGGATGCCTTCCAGGGGGGGCCACAGCTCTGAGAACCCACATGAGATTGACATATGGCATTCAGGGGACGATCTGCAACGATGCGCTGATGGTGTTCTGCTGTGGCTTCTGCGAGACGTGCAGGATGGCTCGGGAGATCCGTATCCGCAGTGGAGAAGTGTGACCAGGATCCTGTGTGGAGTAGCGGTTGGAGCTCATGGCTCTGGACTCTGGGGTCGTGGGTTTAATTGCTGcttttgtacccttgagcaaagtactttaTCCAGAGATCCTCGatctaaactgttttgtttagaTCGAGGATCTTTGTTCACATTTGATATGTGTTGGCAGGTGATTTGGAAAAGATCAAAATAGGCCATTGTCTGTGACTTTTGTATTTAGTACGTTTTAGACCTTTTTGCCAATTTAAATAAACGGTTAACAGTGAAACACAGTCCACATTGATCAGTCTCGGATGTTTTAACTTTCTTCTCACGTATTTCCCTTTTTTAGTGTTGCATTGTGTACTTGTATCATGCAAGTCCTGCCAATAAACAGTaataacattgtgtgtgtggattaCAGCAGCTTCGAAAGTGGGTTTGTAAATGTCTTGAGAAAATGACTTCAATCTCAACCTGCAACAGTGTGCAGTTCAGtgcatgaataataaacagCCTGACTAGGGTCTCTGGTGA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010794 True 2839 mRNA 0.49 9 136369 149730
TU127810 False 981 TUCP 0.49 4 145945 149829

Neighbor

gene id symbol gene type direction distance location
AMCG00010790 NA coding downstream 2275 133732 ~ 134094 (-)
AMCG00010796 NA coding downstream 3045 126979 ~ 133324 (-)
AMCG00010792 stk40 coding downstream 9770 114818 ~ 126599 (-)
AMCG00010795 NA coding downstream 23853 73277 ~ 112516 (-)
AMCG00010793 NA coding downstream 66774 43198 ~ 69595 (-)
AMCG00010791 NA coding upstream 1245 151074 ~ 156797 (-)
AMCG00010797 NA coding upstream 7661 157490 ~ 193075 (-)
AMCG00010798 grik3 coding upstream 415402 565231 ~ 577174 (-)
AMCG00010799 grik3,LOC106605119,LOC106583195 coding upstream 438027 587856 ~ 629893 (-)
AMCG00010802 NA coding upstream 785354 935183 ~ 943466 (-)
G102332 NA non-coding downstream 4787 131350 ~ 131582 (-)
G102360 NA non-coding upstream 137444 287273 ~ 287693 (-)
G102362 NA non-coding upstream 137920 287749 ~ 287971 (-)
G102367 NA non-coding upstream 337444 487273 ~ 487531 (-)
G102372 NA non-coding upstream 410605 560434 ~ 560797 (-)
G102432 NA non-coding upstream 816133 965962 ~ 966216 (-)
G102434 NA other upstream 825724 975553 ~ 978127 (-)
AMCG00010806 NA other upstream 884001 1033830 ~ 1034874 (-)
AMCG00010843 NA other upstream 2332045 2481874 ~ 2496446 (-)
G102762 NA other upstream 2589987 2739816 ~ 2778023 (-)
G102774 NA other upstream 2608649 2758478 ~ 2761264 (-)

Expression


Co-expression Network