AMCG00010808 (LOC106583270,LOC106605111)


Basic Information

Item Value
gene id AMCG00010808
gene name LOC106583270,LOC106605111
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1105183 ~ 1108360 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010808
GGTTTGTGTTCACAGAGTAAACTGCACATGGAGGGCTTCCGCAGCTTGAAGGAGGGCGAGGCGGTGGAGTTCACCTTCAAGAAGTCGGCCAAGGGCCTGGAGTCTCTGCGGGTCACCGGGCCAGGCGGCACCCCCTGTGTGGGCAGCGAGCGACGGCCCAAGGGCAAGAGCATCCAGAAACGGCGATCCAAAGGAGACAGGTGCTACAACTGCGGAGGCCTGGACCACCACGCCAAGGAGTGCAAGCTGCCCCCTCAGCCAAAGAAGTGCCACTTCTGCCAAAGCATCTCTCACATGGTGGCCAACTGTCCGATCAAAGCACAGCAATCATCGCCCAGCTCTCAGGGGAAGCCGGCCTCGTTGaagggggaggaggaagagcagggcCAGGTCCCCCTGCCGCCGGAGAGCTCCGACTGA

Function

NR:

description
PREDICTED: protein lin-28 homolog A-like isoform X2

GO: NA

KEGG:

id description
K18754 LIN28; protein lin-28

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010808 True 420 mRNA 0.62 2 1105183 1108360

Neighbor

gene id symbol gene type direction distance location
AMCG00010812 NA coding upstream 6174 1094122 ~ 1099009 (+)
AMCG00010804 NA coding upstream 64339 1034684 ~ 1040844 (+)
AMCG00010805 mtf1 coding upstream 76593 1012583 ~ 1028590 (+)
AMCG00010803 NA coding upstream 97028 977249 ~ 1008155 (+)
AMCG00010801 sf3a3 coding upstream 147952 951523 ~ 957231 (+)
AMCG00010810 NA coding downstream 18373 1126733 ~ 1131681 (+)
AMCG00010811 ctps1a,LOC108415321,LOC107708718,LOC108433599 coding downstream 31361 1139721 ~ 1147866 (+)
AMCG00010816 LOC108414691,LOC103028730,LOC107689573,LOC105903723,LOC107732921,LOC107595911,LOC107556890,LOC107708721 coding downstream 48297 1156657 ~ 1160427 (+)
AMCG00010814 NA coding downstream 100530 1208890 ~ 1211970 (+)
AMCG00010815 NA coding downstream 139977 1248337 ~ 1255004 (+)
G102415 NA non-coding upstream 138978 965961 ~ 966205 (+)
G102396 NA non-coding upstream 297959 806994 ~ 807224 (+)
G102373 NA non-coding upstream 541990 560886 ~ 563193 (+)
G102363 NA non-coding upstream 712130 392730 ~ 393053 (+)
G102361 NA non-coding upstream 817212 287752 ~ 287971 (+)
G102516 NA non-coding downstream 366638 1474998 ~ 1475210 (+)
G102518 NA non-coding downstream 410039 1518399 ~ 1518698 (+)
G102520 NA non-coding downstream 439450 1547810 ~ 1548180 (+)
G102611 NA non-coding downstream 1066436 2174796 ~ 2175064 (+)
G102622 NA non-coding downstream 1143743 2252103 ~ 2252470 (+)
G102531 NA other downstream 681828 1790188 ~ 1791723 (+)
G102535 NA other downstream 690080 1798440 ~ 1800751 (+)
AMCG00010830 NA other downstream 836695 1945055 ~ 1963965 (+)
AMCG00010832 NA other downstream 931154 2039514 ~ 2064344 (+)
AMCG00010834 NA other downstream 962317 2070677 ~ 2073242 (+)

Expression


Co-expression Network