AMCG00010816 (LOC108414691,LOC103028730,LOC107689573,LOC105903723,LOC107732921,LOC107595911,LOC107556890,LOC107708721)


Basic Information

Item Value
gene id AMCG00010816
gene name LOC108414691,LOC103028730,LOC107689573,LOC105903723,LOC107732921,LOC107595911,LOC107556890,LOC107708721
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1156657 ~ 1160427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010816
ATGGATATTTTGTGGCAATACCAGTTCAGGATCATCCTGTTAGGGGACTCGACGGTGGGCAAGTCTTCCCTGCTGAAGCGCTTCACGGACGGCGTGTACAGCGACGCGGCCGACCCCACGGTGGGGGTGGATTTCTATTCCCGCTCGCTGGAGATCGAGCCGGGGGTGAAGATCAAGCTGCAGCTGTGGGACACGGCCGGGCAGGAGCGCTTCAGGTCAATCACCACTTCCTACTACCGCAACTCAGTCGGCGGGCTCCTCGTCTTCGACCTGACCAACCGCAAGACATTCGAGCACGTGCGGGACTGGCACCGCGAGGTGGGTGAGCACGTCAAGCCGCACTACATGGTGTTCATCCTGATCGGGCACAAGAGCGACCTGGGTGGCGAGCGCAAGGTCTCCCGGGAGGAGGCGGAGAGGCTGGCCTCCTCGCTGGGCGTCCGCTATGTGGAGACGTCGGCCAAGTGCAACAGCAACGTGGACCGGGCCTTCAAGACGCTCATGCGTGACATCTACGAGCTGATGAAGGCCGGGGAGATCTCTACTCGGGATGGCTGGGATGGGGTGAAGAGCGGCCTGAATGCCAAGATCCTCTACCCCCCCGAAGAGGAGCCAAGGGAGAGCAAGTGCCAATGTTGa

Function

NR:

description
PREDICTED: ras-related protein Rab-39B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010816 True 639 mRNA 0.62 2 1156657 1160427

Neighbor

gene id symbol gene type direction distance location
AMCG00010811 ctps1a,LOC108415321,LOC107708718,LOC108433599 coding upstream 8791 1139721 ~ 1147866 (+)
AMCG00010810 NA coding upstream 24976 1126733 ~ 1131681 (+)
AMCG00010808 LOC106583270,LOC106605111 coding upstream 48297 1105183 ~ 1108360 (+)
AMCG00010812 NA coding upstream 57648 1094122 ~ 1099009 (+)
AMCG00010804 NA coding upstream 115813 1034684 ~ 1040844 (+)
AMCG00010814 NA coding downstream 48463 1208890 ~ 1211970 (+)
AMCG00010815 NA coding downstream 87910 1248337 ~ 1255004 (+)
AMCG00010821 NA coding downstream 168452 1328879 ~ 1329908 (+)
AMCG00010820 LOC106604982 coding downstream 202470 1362897 ~ 1368868 (+)
AMCG00010822 ptpru coding downstream 218570 1378997 ~ 1418967 (+)
G102415 NA non-coding upstream 190452 965961 ~ 966205 (+)
G102396 NA non-coding upstream 349433 806994 ~ 807224 (+)
G102373 NA non-coding upstream 593464 560886 ~ 563193 (+)
G102363 NA non-coding upstream 763604 392730 ~ 393053 (+)
G102361 NA non-coding upstream 868686 287752 ~ 287971 (+)
G102516 NA non-coding downstream 314571 1474998 ~ 1475210 (+)
G102518 NA non-coding downstream 357972 1518399 ~ 1518698 (+)
G102520 NA non-coding downstream 387383 1547810 ~ 1548180 (+)
G102611 NA non-coding downstream 1014369 2174796 ~ 2175064 (+)
G102622 NA non-coding downstream 1091676 2252103 ~ 2252470 (+)
AMCG00010809 pdik1l,LOC107690927 other upstream 31471 1046402 ~ 1125186 (+)
G102531 NA other downstream 629761 1790188 ~ 1791723 (+)
G102535 NA other downstream 638013 1798440 ~ 1800751 (+)
AMCG00010830 NA other downstream 784628 1945055 ~ 1963965 (+)
AMCG00010832 NA other downstream 879087 2039514 ~ 2064344 (+)
AMCG00010834 NA other downstream 910250 2070677 ~ 2073242 (+)

Expression


Co-expression Network