AMCG00010817


Basic Information

Item Value
gene id AMCG00010817
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1222087 ~ 1242650 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010817
GCCAATCATATTACGAGCAGCTCGGCCGGCCGGCCAATGGGAGCAGCGCACTGTCACAGGCAAAGCGGAGCCTCAGTAGCTGCGGCGGGACAGACGCGAAGTtacaatgtgtctgtgtgacccGTGAGCTGCCCGTGGTCAGTGTGGGCGGCTCGGCACCGATAGACACTTTGACATCATGTTCGCGACACCCGGCCACGCTCTGGATCCTGTCGACCTCTTGTGTGGATTCGTCTTCATTTTATGTATAGAAACTTTGGGAATTTACGGACAAGAGGGAGAAGGCTGTGGGCGCACTGTGTTTGCGGCTCAGAGCGGCACCCTGGCCTCGCGGAACTTCCCAGGCACGTACCCCAACGGGACGCAGTGTGTGTGGCGTCTGCGGGCGCCTGGTGGGAGGACTCTGCGCCTGGTGTTCGGGGACTTCGACCTGGAATACTCCCGCGACTGCAGCGCCGGCTCTCTAACCATCACCCCCGCCGGTGGGGCGCCCAGCTTGGGTAAGACAACCGCCTTGCCACTCACTGGGAAAGCATCCCTGCAAGCCACACGCCAGCACATGTTCCTGACCACAGATCTGACGGACTGGGTTATACACTGTAAGTTGGCGCTGAACACCAGTGAGGTGACGCTGCACTTCCTCACCGGCACTCACCGCTCTGGCCGCGGCTTCCTCCTGTCCTATGCCACCGACCAGCATCCAGATCTCATTTCCTGTATGCAGCGAGGCATCCATCTCACCACTCCACAGCTCAGGGCTTTCTGCCCCGCGGGCTGCAAGGACGTGACGGGAGACATCTGGGGCCAGCCTGGCCAGGGCTACAGAGACAAGAGCCTCACGCTGTACGAGTCCAGCTTCGCCAACGGGATCCTCTCCAAAACGGGCTCCCTCTCTGAGAAGAAGCTGGTTTTCAGCCGCGagTGTCAGGATGAGCTTCCTGTGTTGCGCTTCAACGCTTCCTCCTACTGGGAGGAAATGGACGGCCTGGGCCGACACGTGCTCTGGTCCCCTGACAATAAACCAGCCCATGGACTGCCCCCCGCCTGGGCTCCGGCTAGCAGCTCTGGTGACCACtggctggagctggagctgcaggAGAAGAGCACTGTCACCGGCATCATCACGAAGGGCTCTGCAGACCGCAATGACTTCTTTGTGAAGGCCTACACCGTCCTCTTCAGCAAGGATGGCAAGAACTGGAAGGTGTACAAGAGCGCGGGCAGCAAGGAGGAGAAGGTGTTTGAAGGGAACTCAGAAAGCATGCATGAGGTGCAGAACAGCCTGATCCCCCCCGTGCTGGCGCGATACCTGCTCCTGCGGCCCCGGGAATACAACAAACGGGCGGCTCTTCGGTCCGGTCAGTCAGTGCTGACGATGGTAGGGGTGGCCATCGCTCTGACGCTGTGTGTGGGGGCCCTGCTGGTGGGCGTCTGCTGGAGGAGAAGGAAACATGCGGCTGAAATGAAGTGCTCCTTGGTGAAAGGTGCCCAGAACTCAGCTGGGAAGACGCAGGGCTGCTACCATGGCACCCTGCCTTGCCCAGAGTCGGAGCTCATATCCTACCCCCTGGAGATGGGCGCCGGCGAGGAGCTGGCAGAGGCCGTGCTGAACGATTATGCCGAGCCGGACCTCGTGGCCGGGGTGGGACAGAAGCTGGGCTCCACGTTCAGGCCTGCGGCGGACGAGGGCTACACCATCCCGCTCATCCTGAACCACTACGACGTCCCGGGGAAGATCCACGAGTACGCCGAGCCCCTGCCCCCGGAGCCCGAGTACGCCACCCCCTTCAGCGAGCTGCCGCAGGCCCCGCACGACGGGGGTGTCAAGAAGAACATCTTTGTGATCCGAGTGATGCCCCCTGCCCAGAGCACCAAACTCGCCCCCGGTGACCCGCCCCAGGAGCCCCAGTACGATTTCCCAGCACAGAGAGGATACAACAGTTACTGCACCCCCCAGGTCTCTGCCAATGGGCCACGCAAAGCCAGCGTGGTGTACGCCGAACCCCAGCCAGGGAGCCCGGCGCCCGGCGCCCGCCTCACACACCCATACCACGAGCCATTGTGATGCGGAGCGACTGAGGGACAAGGCTGCCTTGCAGTGCCTACAGGCGTGCTGTTTGGCCGTGGGGTTGCTGCTCTCTGTGCTGCGGAGATCTGCTGCACTTTGCTCAAGGACGATGTGAAAAGCTGCTCACGTGTGCTGAGGCCATCGAGACGCAGACAACTGCACTGTAGAGAAGACTTCATTCTGGAGACCAGGGCCACACACGTGTGACATTAAACTTCATGTTAACGATCCACCATCAggtgcaaataaatgtttaaattaagctCAGAGATATTCCAGCACAAGGGCTCTCTGTAGCTACAGGAGGATTTAAGGTCACTGgtatggaaatgtattgtagTTAGGAAGGATTTTTTGTCTTCTCTTAGACAGGTGATaggatttcagttttatattttaaataatttatggtAAACGAATACTGCCTTAGTACCTAGTGGATCTTCACAGTTGTCTTACTTTTGGAATCACACGTGTGAGTTCTGCAGTAGAGATCACCtgtgagagaaacagagacatcTGAGCACAGGGACTTGACTCCAGCAGCCGTTCAGTGTGCAACACCCTATACAGCCCAGCGTGACGTCAACGCTTTCATGAAAACCCAGGTTCCAGTGAAAATGTGAAGAAGCCAAGACCTCGGAGTAGAGAAATCGCTTCCACCACAGAAAGCCTTCAGAAAACTGGCCGCCATTGCATGAAactaaaaatgtgcttttcaagaCTTCCTTACTGTGAACGTTGCAACACCAGAAATGTCAGACCACAAAAGTGACtctttactattttatttatgaagtgacTCATCTGGTGTCCAGTTCAATCCAGAGACCGCAGCTCTCGGGCTACGGTGTCTGCAGTGGATTTTAGCTGCTGGTTAAGAAAATTAAGTGCCTTCAAAGTTCAAATGAAACTCTTCCACTTGtactgtacaaatataaaacacagggcGAGTAAGACTGGGTTTGCTCATCACTGGGCCTGTTATTAAAggttattgtaattatattttttaatctgaaatgttatttgtattttgatgtttaaaaaatgaagtcaAAATGCgactgcacattttaaaaagcttccaGACAAAGACGGGATTTATATTCGCACATGGGAACACACTCACCACTTTTGCACGTCCACTGAACACATTGGAGtgtgtatgaaaaataaataaaaaacatttaaaaagacaatgacCGAAGACTGATCTGGGAGAGTGTCGTTCTTTGTGTGTTGACAAGGATTCATGGAGGACACAACACACAATATTGAGCCGGGACAAACGTCCGCACCCCTCTAAATAACTGCTTGTtctgaaattaatgaatacagtgACTCAAAATTAGTAAAGAACCTTGTCCATTCTACAAGTAATTGTTAGTAATTTACAATATGTTGTAGCAATTGCTAGTAATGTCAAATGtaagtaaatatattatgttcagtaaac

Function

GO:

id name namespace
GO:0003997 acyl-CoA oxidase activity molecular_function
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010817 True 3527 mRNA 0.53 14 1222087 1242650

Neighbor

gene id symbol gene type direction distance location
AMCG00010818 taf12,LOC107705731,LOC107588503,LOC107566933,LOC107755488,LOC107700725 coding downstream 2761 1214405 ~ 1219326 (-)
AMCG00010819 NA coding downstream 12825 1166100 ~ 1209262 (-)
AMCG00010813 NA coding downstream 85250 1132770 ~ 1136837 (-)
AMCG00010807 maneal,LOC105903681,LOC106583256,LOC102777073 coding downstream 165166 1042001 ~ 1056921 (-)
AMCG00010802 NA coding downstream 278621 935183 ~ 943466 (-)
AMCG00010828 NA coding upstream 550127 1792777 ~ 1796592 (-)
AMCG00010829 stmn1,LOC107587743,LOC104924882,LOC103040240,LOC107700727,LOC107597104 coding upstream 555569 1798219 ~ 1800760 (-)
AMCG00010827 pkib,LOC105417165,LOC107098269,LOC107374466 coding upstream 579001 1821651 ~ 1836885 (-)
AMCG00010836 NA coding upstream 900468 2143118 ~ 2180497 (-)
AMCG00010835 oprd1a,LOC108411271,LOC107595906,LOC107732912 coding upstream 937854 2180504 ~ 2182472 (-)
G102470 LOC108245179,LOC103363630 non-coding downstream 61012 1156556 ~ 1161075 (-)
G102466 NA non-coding downstream 70698 1149434 ~ 1151389 (-)
G102443 NA non-coding downstream 213959 1005117 ~ 1008128 (-)
G102433 NA non-coding downstream 247446 974435 ~ 974641 (-)
G102432 NA non-coding downstream 255871 965962 ~ 966216 (-)
G102498 NA non-coding upstream 12070 1254720 ~ 1257986 (-)
G102507 NA non-coding upstream 173611 1416261 ~ 1459547 (-)
G102519 NA non-coding upstream 275725 1518375 ~ 1518699 (-)
G102521 NA non-coding upstream 305166 1547816 ~ 1548095 (-)
G102525 NA non-coding upstream 425388 1668038 ~ 1668284 (-)
AMCG00010806 NA other downstream 187213 1033830 ~ 1034874 (-)
G102434 NA other downstream 243960 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 1072258 136369 ~ 149829 (-)
AMCG00010843 NA other upstream 1239224 2481874 ~ 2496446 (-)
G102762 NA other upstream 1497166 2739816 ~ 2778023 (-)
G102774 NA other upstream 1515828 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 1937320 3179970 ~ 3182619 (-)
G102990 NA other upstream 2078163 3320813 ~ 3419176 (-)

Expression


Co-expression Network