AMCG00010820 (LOC106604982)


Basic Information

Item Value
gene id AMCG00010820
gene name LOC106604982
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1362897 ~ 1368868 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010820
ATGTACAGATATGCTCTCAGATCTTGCAGCCCCTTCTCGTCCGGGTCTGTTCTGCGTCAGCCGCGTTCAACGCCCCATGACTCGGCACCACGGCCCCCTACTCCTCCGGATCGGCTTGCTTCTCCCCGCGCTGATGTGATTGAAACCTCGCCGATTGAAGCCGCTTCACCCGCAGCCGCGCGGGCGTCGTGCGATCTCATCTCGGTGGCACGGGTAATTGGGTCGGACTCGTTTGAGATCCCAATCTGTCATGTGGTCAGGGGCACTGGAAGAGGATCCTACATGGTTGTGAACTCCTCCCAGCATGCCACGGGGCAGCGCGCCCACCTCCTGCTGCAGACGCTGAGTGAGAACGACACGCACTGCGTCCAGTTCAGCTACTTCCTGTACAGCCGCGATGGCCACAGTCCGGGGGCGCTGCGGGCCTACGTGCGGGTCAACACCGGGCCCCTGGGGAGCCCCGTCTGGAACGTCTCGGGCTCCCACGGGCGCCAGTGGCACCAGGTGGAGCTGGCGGTGAGCACGTTCTGGCCCAATGAGTACCAGAGAAGCACCGCGCCagaaaacgacaacaacaacaacatgaaaacactgaaactggCAGCCGACCAGCACCGTGCATCGCAGGAATGGGCCCTTTTGGCAATCGAATCGGCCACcttagaataa

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase U-like isoform X4

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010820 True 669 mRNA 0.61 4 1362897 1368868

Neighbor

gene id symbol gene type direction distance location
AMCG00010821 NA coding upstream 32989 1328879 ~ 1329908 (+)
AMCG00010815 NA coding upstream 107893 1248337 ~ 1255004 (+)
AMCG00010814 NA coding upstream 150927 1208890 ~ 1211970 (+)
AMCG00010816 LOC108414691,LOC103028730,LOC107689573,LOC105903723,LOC107732921,LOC107595911,LOC107556890,LOC107708721 coding upstream 202470 1156657 ~ 1160427 (+)
AMCG00010811 ctps1a,LOC108415321,LOC107708718,LOC108433599 coding upstream 215031 1139721 ~ 1147866 (+)
AMCG00010822 ptpru coding downstream 10129 1378997 ~ 1418967 (+)
AMCG00010823 ptprub,LOC107705793,LOC107700666,LOC107704844,LOC107755971 coding downstream 59776 1428644 ~ 1452530 (+)
AMCG00010824 NA coding downstream 88622 1457490 ~ 1457729 (+)
AMCG00010825 NA coding downstream 89961 1458829 ~ 1459989 (+)
AMCG00010826 LOC103361910,LOC100710164,LOC106570256,LOC105009339 coding downstream 481916 1850784 ~ 1859425 (+)
G102415 NA non-coding upstream 396692 965961 ~ 966205 (+)
G102396 NA non-coding upstream 555673 806994 ~ 807224 (+)
G102373 NA non-coding upstream 799704 560886 ~ 563193 (+)
G102363 NA non-coding upstream 969844 392730 ~ 393053 (+)
G102361 NA non-coding upstream 1074926 287752 ~ 287971 (+)
G102516 NA non-coding downstream 106130 1474998 ~ 1475210 (+)
G102518 NA non-coding downstream 149531 1518399 ~ 1518698 (+)
G102520 NA non-coding downstream 178942 1547810 ~ 1548180 (+)
G102611 NA non-coding downstream 805928 2174796 ~ 2175064 (+)
G102622 NA non-coding downstream 883235 2252103 ~ 2252470 (+)
AMCG00010809 pdik1l,LOC107690927 other upstream 237711 1046402 ~ 1125186 (+)
G102531 NA other downstream 421320 1790188 ~ 1791723 (+)
G102535 NA other downstream 429572 1798440 ~ 1800751 (+)
AMCG00010830 NA other downstream 576187 1945055 ~ 1963965 (+)
AMCG00010832 NA other downstream 670646 2039514 ~ 2064344 (+)
AMCG00010834 NA other downstream 701809 2070677 ~ 2073242 (+)

Expression


Co-expression Network