Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00010825 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030133.1 |
| NCBI id | CM030133.1 |
| chromosome length | 32682731 |
| location | 1458829 ~ 1459989 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00010825 | True | 342 | mRNA | 0.59 | 4 | 1458829 | 1459989 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00010824 | NA | coding | upstream | 1100 | 1457490 ~ 1457729 (+) |
| AMCG00010823 | ptprub,LOC107705793,LOC107700666,LOC107704844,LOC107755971 | coding | upstream | 6299 | 1428644 ~ 1452530 (+) |
| AMCG00010822 | ptpru | coding | upstream | 39862 | 1378997 ~ 1418967 (+) |
| AMCG00010820 | LOC106604982 | coding | upstream | 89961 | 1362897 ~ 1368868 (+) |
| AMCG00010821 | NA | coding | upstream | 128921 | 1328879 ~ 1329908 (+) |
| AMCG00010826 | LOC103361910,LOC100710164,LOC106570256,LOC105009339 | coding | downstream | 390795 | 1850784 ~ 1859425 (+) |
| AMCG00010831 | NA | coding | downstream | 519630 | 1979619 ~ 1986242 (+) |
| AMCG00010833 | rcc1,LOC107700729,LOC107735284 | coding | downstream | 607676 | 2067665 ~ 2069500 (+) |
| AMCG00010837 | NA | coding | downstream | 898524 | 2358513 ~ 2363722 (+) |
| AMCG00010838 | NA | coding | downstream | 904221 | 2364210 ~ 2368559 (+) |
| G102415 | NA | non-coding | upstream | 492624 | 965961 ~ 966205 (+) |
| G102396 | NA | non-coding | upstream | 651605 | 806994 ~ 807224 (+) |
| G102373 | NA | non-coding | upstream | 895636 | 560886 ~ 563193 (+) |
| G102363 | NA | non-coding | upstream | 1065776 | 392730 ~ 393053 (+) |
| G102361 | NA | non-coding | upstream | 1170858 | 287752 ~ 287971 (+) |
| G102516 | NA | non-coding | downstream | 15009 | 1474998 ~ 1475210 (+) |
| G102518 | NA | non-coding | downstream | 58410 | 1518399 ~ 1518698 (+) |
| G102520 | NA | non-coding | downstream | 87821 | 1547810 ~ 1548180 (+) |
| G102611 | NA | non-coding | downstream | 714807 | 2174796 ~ 2175064 (+) |
| G102622 | NA | non-coding | downstream | 792114 | 2252103 ~ 2252470 (+) |
| AMCG00010809 | pdik1l,LOC107690927 | other | upstream | 333643 | 1046402 ~ 1125186 (+) |
| G102531 | NA | other | downstream | 330199 | 1790188 ~ 1791723 (+) |
| G102535 | NA | other | downstream | 338451 | 1798440 ~ 1800751 (+) |
| AMCG00010830 | NA | other | downstream | 485066 | 1945055 ~ 1963965 (+) |
| AMCG00010832 | NA | other | downstream | 579525 | 2039514 ~ 2064344 (+) |
| AMCG00010834 | NA | other | downstream | 610688 | 2070677 ~ 2073242 (+) |
