AMCG00010830


Basic Information

Item Value
gene id AMCG00010830
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1945055 ~ 1963965 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010830
cagaCAAGCATGAAGGCGCCGTTGGTGGCCATTGGGAAGAGACAGTAAATAGCCGCCACTGAAGTCTTTGGAAGAGGGAAGACAGTCGACTGGGAGGAAAGGCCGACGGACCGGACATATCGGTGGCCCTGTGTCCCTGGACAAGGGAACAGCCCCTGGAGAAACCCCTGTGCTGAGGGCGCGCCGGCCTGACGATGGGCGGTTCACGGCGGCCAAGGAGGCTGTCGAGGCAGCGTGTCAGACTGGAGATGTCTTCTAGGATACTTCCCCTCGGTGCTTTCTGATAGTGTCTTCACAGAGGGCCTTTAACCTAGACGCCAAACGttcagagagaaacacaattcGGATCAGGGGAAACGGACACATTGTACTGTCGCTACAGAGTCACCATCAGCTCCCCCTCCCCGATGCCTCTATTTTCAGAGGGACGGTGGCTCTCCGGCTAGTTCGATGAACCCCCCCGCCCCGAGTCCGACACAAGCATTCCTAGCGTGTACCTGAGGCCCCCTCCCCACCCGATGGAGGCCGAACACAGCCAGCCGACCGGTGGGGAGCGGTCCGGAGGGCAAGAACAGTCTTCATCAGAACCTCCTGTGGGGAGCGGCTCGCCCCAGTCTCCGTCCCTGCAGTGCCAGCGGCTGTTCCCCTCCCGGTCCACACACCCGGCCCACGGCAGGCATCACCCCCGGCCACACAAGCGAGGCAGCCTGGAGCGCCACTATCAGCGGCTACAGCAGCAGCCGTCTCAGCCATTCCAGCTGGCCGGGAAAGCGGAGACGGAGAGGGCCGGGGCGGTGTGGCAGTTCACAGAGTCCCCCGGTCCTTCTGGAAGTAGTTACCCTtcatcctccacctcctctccctcctcctctggTGTGCATCCCCAGGTCGCACCTCCCCACGCCGCTAAGGAAGCACAAGAAGGCGTCCCCAGGCGGGAGCGAAAGCCTCAGAAGCCGGGGAAGTATGTGTGCCAATACTGCAGCCGGCCCTGTGCCAAGCCCAGCGTCCTCCAGAAACATATTCGCTCCCACACGGGGGAGAGGCCGTACCCATGCGCCCCCTGTGGCTTCTCCTTCAAGACCAAGAGCAACCTCTACAAGCACCGCAAGTCCCACGCCCACCGGATCAAAGCGGGCCTCGCCTCAGGCCGGGAGGGCTACTCCTTGAGCAGCCAGGAGGGCTCGCAGCCGGGAGAGGACCAGGAGGAGCCAACCGAGGGGGAGAGCACAGACTCGGAGGAGGAGACCGGCCAGCACACGCCTTCCTCCTCCCTGGACAAGTACAGAAGCCTGTCGTCCCAGAAGAGTGGCAGTCTGGAGAGGGCCGCCCCCGAGGAGAGCCAGTGCTCGGACGAATCGCACGCCGTCAAGCAGAGGCTGGCCATGCGCCTCAGCGAAAGGAAGCGTGCCCCAGTGTCACAGTCGGACGACTCCCAGTCCTTCCTCAGTCCTGGCAGTAAGGGCAGCACCGAGTCCGGCTATTTCTCCCGATCGGTGAgtgaggagcagcagcaggtcAGCCCTCCCAACGCCAACGCCAAGAGCTATGCCGAAATCATCCTGGGCAAGTACGGGCGGCTGGGGCAGCAGCAGAGGACCgccccccagcagcagcagcagccgcagcCATCCTCGTCCGGTACCCCAGAGGAGAAGGGGGTGTCCTTCAGCGTACCCAAAACACAAGTCATCGAACACATCACCAAGCTCATCACCATCAACGAAGCCGTGGTGGACACCAGCgagatcgacagtgtcaaaccCAGAAGGACGTCTCTGTCCAGGAGGAGCAGCATTGAGTCTCCCAAAATCTCAGCCCTCAAGGATCCCTTTGTGTTCGACTCCAAGGGGGAGGTCCCCGGTGCCGGCGCCAGTGGCAGCGTGAGTGTGGGGTTTGTGTGTGACCCTCTCCATCCTCAGTTCCCCAATGTGGATCTTCTGGCTGGCCAGGCCTCCACAGTGCCTCTCCTGAGAAGCCACTCAATGCCTTCCTCGGCCGGCCCCAGCGAAACGGCAGGCAGCTCTTCTCGCAATATCCGCCTGAGCCACTCCTTTGATGAGCAGCAGGCCGTGGCCACCGAAGTCCGGGCAGGGGCCCTGCTGCCACCCCAACATCGTATGCTGAGACGCCAGCCCGCCATCGAGGTGCCCTTGGGGACCGAGTTCATTCCAGAGGAGGCTGGCTCCTCCGCCTCGGCCTCGAGCACCTCGGTATCTGATCCTGGACGGAAACATCGCCGAGGACCCAGGCTGTATGAGTGCGAGGCCTGCGGCGCTCGTTGTAAGAAGCGTGAGATTTACGAGATCCACCGACGCACCTGTTGCCCGGCCCGTGTGGCACCGGAGTGTAAAAGGGCTACAGAGACCAGTGCCTACCAGGAAGACCGTCCACAGATGATGCACTACAAGTTCGGGGGCACAGCAGCAGCCATGCGGaagagaaggaaacaaaaaagcctGGGGGACGATGAGGAGCCCCCCGTCTTTGAGCCTGGTCCAGCTCCGGCAGCTACCTCCTTCCCTCCTTCATGCACCGCCATCCCCAGCAGAGAAGAAGGTCGACCGGCCGTTGAGAACCCGAGGTGGGACAGCTCTCTAGGGGCCCCATCGCAGATTGAGCCAGACCGGAGAACCACGTGGAAAGAGATCTCTGTGATCCAGCACACCAGCTCCTTCGAGAAGCAGGAAATGTCCTTCGAGAGTCAGGAGAGTGAGGAGAAACGCGTTGCTTCTCCCGCCCGAGAGGAGCACCAGCAACCGCCACAGCAGCAAACGCCAAAACCTTTTTCCAAGCTGGTCAGGCAACCGAATATCCAAGTGCCAGAGATCCTTGTTACAGAGGAGCCGGACTCTGATGTGGTGCTGGTTTCACCTCCAGCCACCGTCCCGAAGGAGCCGGAGAAGGTTGTTGAGGAGTTTCAGTGGCCTCAGAGGAGTCAAAGCCTGGCTCAGCTACCAGCCGAGAAGCTGCCGCCAAAGAAGAAACGCCTTCGTCTGGCCGAGGCTGCTCAGTCCTCAGGAGAGTCCAGCTTCGAGTCTGTCTCCCTGCCCCGCAGCCCCAGCCAGGAGAGCAACCTGTCCCACGCTTCTAGCCGCTCAGCATCCTTTGAGGAATCGGGGAAGCCTGATTCCGAAACTCAGCCAGCAGCTACCAGAACATCCCAGGTGACCCACATGCTCACCGTCCCCTCCGGgcaccaccagcaccaccagCCCCACCGAGAGATGCGACGGTCGGCCTCCGAACAAGCGCCAACCAGCGTCCAGCACTCGGCCCAGATCGCGGAGGCCCGGAGCAAGTCCTTCGACTACGGCTGCCTCTCCCCCCAGCACTCCTCCGCCGCCTGGAGGGAGAGGCGGAAATGCCTCCTGGTGCGGCAGGCCACGCTGGGAGAGCCCGAACCCGAGGAGCAGCCGCCGGGATGGGCTGCCAAAGCCGCCcagcctgtgtgtctgtcttatCACAGCCCAGCGCCGCCCCCTGGCAAGCCGAGCACCGCCTGCTCGTCCGTCGTACCCGACTCCCTCGCCAAGTCCTTGCAGCTCCACCAGTCCCCCCTCCCGCGTGATCCCCAGCCCGTTTTCCCACGACACCTGCCAACCCAAGGGCACCTGCCTCGGCTGTTCCCCACACCGGGCCTTTCCGAGGTCCTTCAGACCCAGATCGTCCCCCCGTCCTTCTTGCCGAGCGCTCCACAGCTCCACCCAACACAGCTCCACATCGTCGAGCGCCTGGGCCTCCCCATGCAGCCGTACCCACCTCTCCTGCCCCTCCAGTATCCGACGGGCGCCGCCCAAGCCCTCTACCTCCCGCTGCCCTCTGGGTTGGCCCTCCAGATGCCGGTGGAGCCCTTCCGGGAATCCAAGCCATCCCCTTCCTCGCAGTGCCCGGGTTCCCAGCATCCTCCGCCAGTCATCGCCCCCAGCTTGGAGCAGCTGAGGCCAGTAGTGTCCTTGGTGGTGCCGGTCCGCCTCCAGACCAACGTCCCGACCTACGCCAGCGCCATGTACACCACGTTGTCCCAGATCCTGGTCACCCGTGCGCAGGAGTCGGCCTGCTCCGCCGTCGTGCTGTGCAAGGCGGAGGAGGAACGGTTGCAGAACCCCTACCTGAAGATCCCCACCCCCGACTTCAAGAGCTACTTGCCTCTGACGTTGCCTCTTGGGTCGGGAGCTGGCATGGGATCGGAGGAGGGCCTGGGACCCTCCACGGCGGGGGGCAACAAGCGGATGCTATCCCCGGCCGGCAGCCTGGAGCTGAGTGTGGAGGCGCAGCGGCAGCAGAAACgagtgaaggaggaggaggaggaggaggaagaggaggaggagagcgagCGATTAGAGAGGATGGAGAAGGGTCGGATACAGGCTGCCATGGAGCACCaagggaaggaggaagaggagcagagGAAGGAGGACAGGAAGGCAGTGCCGGGGAAAGCCGAGCCCTtcaaggaggaagaggaggaagtcAGCATTCAGATCCACCCGCCGAGAGCCCGGAGCCCCGAGGGCAGGAAGGCGCCGCCGTATCCGAGCCTGCACACCACCACCTCCGTCAGCTGGTGCTATCTGAACTACGTGAAGCCCAACCCCTCGCCGCAGAGGGACCCCCAGACCTCGGTGTACTCGTCCTGGTGCATCAGCGTGCACAACCCCAACCTGCCTGGCCTGTCCACCAAGGCCTCGCTCTCGCTGCTGCGCTCCAAGCAGAAGTACAGCCCCGAGACCTACACCATGGCCACGGCCAGCCGCGCCTCCTCGGGAAAGCTGGTGCCGGCCAACTCCCGGAAGCCCAGGATGTCCGAGGTGCACACGGCCCCGGTGAGCGCCGCCCCAGAAGTAAAGGAGGCCACGCAGCCCGAGAAAGAGGAGGACAAGAGGGggaagagggaagaggaggCGTCCACCTCAAAGCGCGGAGAGCCGTCCCGCATCCGGATCTTCGAGGGCGGGTACAAGTCCAACGAGGAGTACGTGTACGTGCGCGGGCGCGGCCGGGGGAAGTACGTGTGCGAGGAATGCGGCATCCGCTGCAAGAAGCCCAGCATGCTGAAGAAGCACATCCGCACCCACACGGACGTGCGGCCCTACGTGTGCAAGTACTGCAACTTCGCCTTCAAAACCAAAGGGAACCTCACCAAACACATGAAGTCCAAGGCCCACGGGAAGAAGTGCCAGGAGATGGGTGTCGCCGGCTCCTCGCTGGACGAGCTCGAGGCCGAGGAAGGAGGAGGCAGTGAGGGGCGCACCGGCGGCtcggaggagcaggaggagcaCCAGTTCTCCGACGTGGATGACTCCGATGACGATGACGACAacgaggatgaggaggaggaggaggagtccTCTTCCCACGAGGAGccatcttcctcctgctccccaGACACCCGACACTCCACGGGGGGGCGCTCCTCCCAGCAGGACACCCCTGAGCCTCCTCTCCCCCCGGTCCCAGAGAAGGAGCCTGCCGCCCGGCCGCAGGACTACCCGTCGCCCCGGAGGCACTGGGCCAGCGCTCGGGAGGCGTCCCCGGGCAGCCGCCGGGCCCTGTTCTCGCGCCGGCACTGGGAGGCCTCTCCACGGACTTTCTCCCCCAGCGGCGAGGGCTCCCCGCTGCGCTGCCTGTCTCCGGGGCGAGGGCTGTCCCCTGTCCGGCCGCTGTCCCCCGGGAGGGAGGCATCCCCCCTGCGCTGCCTGTCCCCCCGGCTGGAGCTGTCCTCCTCCGGCCGCCACCCCTCGCCCTCCCCCGAGAGAGGCCCGTCGCCCCTGCGCCCGCGCTCCCCCAGCCGCTACCTGGCGCCCCGGGCACTGCCCTCACCCGTCCCCACCGAGGGCCCGGCGCCCTACCCGAGGGCCCACTTCTCCAGCACCTTCGGCGGTGCGCAGCTCCACGGGGAGCCCCCCAGCTCGGAGGCCAGCGAGGAGCGTCCGTTCTTCCTCCGGGAGGGAGTGAGCTCTGGGGAGGGCTGCACCTTCCCCCCTGCGCTGCGGCTCTCGCCCTCGGACTTCCCAGGTCACGTGCCGGCCCGGTCCCCCAGGGACCACGTCTTCAGCCACCTCCCCCTGCACTCCCAGCAGCTCACCCGGACCCCCTATCCCATGATCCCCATCGGGGGCATCCAAATGGTGCAGCCTCGCCCCAGCTCCCACGCCGGCCGGCCCCAGAACCCCGCCACCACCCTGCCCTTGCCCCGGGGAACCGGCACCAGCCTGGGCGGAGGGCTCGGGGACCGGGGGACGGAGGGCGTCAGGAGGCTAGCGGACACGAGGGAGTCCACCAAAGTGGGGTCCCCGGGCCCCTCGTCGGAGGAACGCAGGCTGAGGGAGCGGCGGAAACCTCAGGATTACAGGGTACAGGAATCGGAAGCCGGAACCAGCCTCTCGGGGCTTTGCACGGGCGGGCCGGACTCAGCCAGCGCCGGCCAGACGCCCCCCGAACTCGTTTCACAGACCGGCGGCGAGGAGCCCCCGGACTCGGGCACAAAGCAATATGGCAGCTCACGCACTTACTCCCAGACGAGCACTTTGGTCGGCGACACGACCGCACAGACCGCAAACCGGAGCTCCGGGGCCGCGGGGGCCACAGAGGCCTCCACCAGCCGGCTGGACACCACCCCACCCAGGACCACACCGCTCCCTGGGGAGGAAGGGCCCCCAGCTGGGCGGCACCGGAGGCGTGGCCCCGAGGCCGCAGGAGGAAGCACGACCAGTGTGGGTCAGAACAAGGACAGCAGAACAGGAAGCACTTAACAGTCTCCGCCCCCTGGCTCTCCCTGGGGGGCCAGCGAAGCtctttaatgttgttttatagttttatttggttggtttgtatttttattcatttgttttatacaaattcCAACACTATTGTTTACTAGTTTGTCTGTTCTTTTATTCTGCGATGGCCTAATTAGGAATATAATAAGATGCACCTTTTGTCACACCTTTTTATCGATCTCTCTCTATATCTGTCCGTCCGTCATCTCTTTGtacatctatttatctatcttgctatctatttaaatatataaacatatatatataaatatatttgtaaatgaccAAAATCAATACGCAAAACAATAATTCCTACTTCGTTTGTCCCGTGTCCAGTATTACTCAAATGTACAGTTTCTCGTGCCTTTTCTGTATGAGGTTTGTTGCTTCAAATGTagacaaaaaatgtttaaaggctgtgaatttatttagtttttgttcattttttgtttgttttctaggTATTTTGTGTACTGGGTTGGGGGGGAGCCAATGGATTGTTTCTGGGgccgtttttttgtttgtttttaagtcagGGTCACAGTTAGGGGTTCAGTGGGGGGGGAGGCGATCCGGAGGAGGAGAAGTCGAGAGTTTTGCAAAGGTAATGCACTGAagtcatattttttatattaataaaagttAGATCTTACGTCGGTGTACAGAACAGAAGTCTATGGTCCGTAtttattgctgtatttaaacTTTATGAGATGGcttcttttgtttagttttgtttcttttctaaaaCATGCTGTTATGATCTGTCACTTACCTGCGTGTCTTCTTTTTGATAACGTTCTTATGACTTGAAATTTGAGGTACGGGAGGGAGGG
>TU128059
ACGGGCGGGCCGGACTCAGCCAGCGCCGGCCAGACGCCCCCCGAACTCGTTTCACAGACCGGCGGCGAGGAGCCCCCGGACTCGGGCACAAAGCAATATGGCAGCTCACGCACTTACTCCCAGACGAGCACTTTGGTCGGCGACACGACCGCACAGACCGCAAACCGGAGCTCCGGGGCCGCGGGGGCCACAGAGGCCTCCACCAGCCGGCTGGACACCACCCCACCCAGGACCACACCGCTCCCTGGGGAGGAAGGGCCCCCAGCTGGGCGGCACCGGAGGCGTGGCCCCGAGGCCGCAGGAGGAAGCACGACCAGTGTGGGTCAGAACAAGGACAGCAGAACAGGAAGCACTTAACAGTCTCCGCCCCCTGGCTCTCCCTGGGGGGCCAGCGAAGCtctttaatgttgttttatagttttatttggttggtttgtatttttattcatttgttttatacaaattcCAACACTATTGTTTACTAGTTTGTCTGTTCTTTTATTCTGCGATGGCCTAATTAGGAATATAATAAGATGCACCTTTTGTCACACCTTTTTATCGATCTCTCTCTATATCTGTCCGTCCGTCATCTCTTTGtacatctatttatctatcttgctatctatttaaatatataaacatatatatataaatatatttgtaaatgaccAAAATCAATACGCAAAACAATAATTCCTACTTCGTTTGTCCCGTGTCCAGTATTACTCAAATGTACAGTTTCTCGTGCCTTTTCTGTATGAGGTTTGTTGCTTCAAATGTagacaaaaaatgtttaaaggctgtgaatttatttagtttttgttcattttttgtttgttttctaggTATTTTGTGTACTGGGTTGGGGGGGAGCCAATGGATTGTTTCTGGGgccgtttttttgtttgtttttaagtcagGGTCACAGTTAGGGGTTCAGTGGGGGGGGAGGCGATCCGGAGGAGGAGAAGTCGAGAGTTTTGCAAAGGTAATGCACTGAagtcatattttttatattaataaaagttAGATCTTACGTCGGTGTACAGAACAGAAGTCTATGGTCCGTAtttattgctgtatttaaacTTTATGAGATGGcttcttttgtttagttttgtttcttttctaaaaCATGCTGTTATGATCTGTCACTTACCTGCGTGTCTTCTTTTTGATAACGTTCTTATGACTTGAAATTTGAGGT

Function

GO: NA

KEGG:

id description
ko04070 Phosphatidylinositol signaling system

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010830 True 7618 mRNA 0.62 7 1945055 1963965
TU128059 False 1207 lncRNA 0.45 1 1962746 1963952

Neighbor

gene id symbol gene type direction distance location
AMCG00010826 LOC103361910,LOC100710164,LOC106570256,LOC105009339 coding upstream 85630 1850784 ~ 1859425 (+)
AMCG00010825 NA coding upstream 485066 1458829 ~ 1459989 (+)
AMCG00010824 NA coding upstream 487326 1457490 ~ 1457729 (+)
AMCG00010823 ptprub,LOC107705793,LOC107700666,LOC107704844,LOC107755971 coding upstream 492525 1428644 ~ 1452530 (+)
AMCG00010822 ptpru coding upstream 526088 1378997 ~ 1418967 (+)
AMCG00010831 NA coding downstream 15654 1979619 ~ 1986242 (+)
AMCG00010833 rcc1,LOC107700729,LOC107735284 coding downstream 103700 2067665 ~ 2069500 (+)
AMCG00010837 NA coding downstream 394548 2358513 ~ 2363722 (+)
AMCG00010838 NA coding downstream 400245 2364210 ~ 2368559 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding downstream 645308 2609273 ~ 2615203 (+)
G102520 NA non-coding upstream 396875 1547810 ~ 1548180 (+)
G102518 NA non-coding upstream 426357 1518399 ~ 1518698 (+)
G102516 NA non-coding upstream 469845 1474998 ~ 1475210 (+)
G102415 NA non-coding upstream 978850 965961 ~ 966205 (+)
G102396 NA non-coding upstream 1137831 806994 ~ 807224 (+)
G102611 NA non-coding downstream 210831 2174796 ~ 2175064 (+)
G102622 NA non-coding downstream 288138 2252103 ~ 2252470 (+)
G102628 NA non-coding downstream 352972 2316937 ~ 2317570 (+)
G102655 NA non-coding downstream 485235 2449200 ~ 2449881 (+)
G102693 NA non-coding downstream 659641 2623606 ~ 2660858 (+)
G102535 NA other upstream 144304 1798440 ~ 1800751 (+)
G102531 NA other upstream 153332 1790188 ~ 1791723 (+)
AMCG00010809 pdik1l,LOC107690927 other upstream 819869 1046402 ~ 1125186 (+)
AMCG00010832 NA other downstream 75549 2039514 ~ 2064344 (+)
AMCG00010834 NA other downstream 106712 2070677 ~ 2073242 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other downstream 792331 2756296 ~ 2762226 (+)
AMCG00010856 NA other downstream 805175 2769140 ~ 2778033 (+)
AMCG00010884 NA other downstream 1337991 3301956 ~ 3310953 (+)

Expression


Co-expression Network