AMCG00010832


Basic Information

Item Value
gene id AMCG00010832
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2039514 ~ 2064344 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010832
agagctctctctctctggaagCTCACCTGCCCCCAGCTGGGCCTGTGCCAGTCCTCACGGTCGAATCGCACGGTGCCTTTCGGGCTAAGCCGGAGCCGGATGACCGATTTAGCATTTAACCTTAAGCTGGAGCTGGACTCCCCCTCGGCCCAGCTCACGTTTTCATTCCCGGCGGCCACTCCCTCAGAGAAGCCGGCCGTGCTgctggttgttgttgttacaccTCAGCTGTCCGCGCTGACAGCACTGGAGCGCAGCAGCAACCATCGGAGACGCCGGAATGATGAGGTCGACCACCAGCACAATACGACGGGCAGCGAGGGGGGCAACTCCGGGGagagcaccccccccaccaggcGCAAGGGCAAAAAGATTTCGATGAGACGACCCAGACAGGAGCTGATCGAGAAGGGGGTGCTGAAGGAGATCCCAGAGAACGAGGCAGACAACCAGAACAGTTCCAAGCAGCCCGCCGTGAAGAATGGCCACACGGTGCCTGTGGGAGGGGGCCGCCACCCCGAGCCGGGCCGCCCCGCTTCGGAGTTCGAGTTTAAGGGCAACCCCAGCTGGCTGCCCCAGGGGGACGAGGCCAGGAGGAGCCGCATCCCGTCGGACGCGGAGAAGCGGTTGTCCCACGCCAAGCCCGTAGGAACAGAGGAGGGCAGACGCGGCCGGCCACACGCCGACCTGGACAAGATGCCCAGCCTGCAGAAGTCGGACGAGGGCAGGCGCTCGCGGCCCAACTCGGAGGCCGACAAGAGGTCCACTCTGACCAAGGTGCCCTCGGAGGAAGGCAGGAGGGCCCACCGGCTGCCCTCCGAGGGCGACAAGAGGGGCTCCCTCCCGAGACACGTGTCCGCAGAGGAAGGCAGGACCCGGCGAGAGTCGAATGGGAGCCGCCCACCCTCCGAGAGCGAGGCCCCTCGGGACACCCTGCGGGAGCCGCTGCCCCCCAAGCAGCCCATGCTGCCCCCCAAGTGGCTGGTGTGTCCCCCCTACCAGGAGGCTGGGGGTGACGCGGCGGGGAAAGACCACCCGGCGGCCAAGAACACTGCCCCCTCGTCCTCCTCCGCTAGCTCGGCCGCCAAACCCGGCAGGACTCCTGTTAACCGGAATAGCAACCCTGCTTTACTAGCTGAGCTCTCCCAGGCGACGGGCGGCGTGAATCTGATGCCAGTCAAGCCCTCTCCTCCCCTGCCGCCGAAGAGGACCACTCCCGTCACCAAGCGCACCGTGGAGGAGCCGTCCCCTGCCCCGGCCGCGCCCCCCGAGGAGCCTGACGATCAGCTGCCCCCGGCTCCGGGCTCGCCCCAACTGCCCTCGCACATCCCACCCTCCCCGCCCCGCACTCgcaccctccccctccccctcccccacccgcACCCGCACCCCCACGCCCAGCCCCCCTctgcagccccccagcccccttcCGACCCCCCAAGCGCCACCCCGGAGCCCCAGCGCCAGCCTGCCGTCCCCCTGCACATCATGATCCAGCGGGCACTTGCCAGCCCCGGCCCGGCTGTGCCCAACCCCGACGGCTCCCAGCGAGCCCACTCCCTGCTCTTCGAGACGCCCCCCGACTACCAGTCGGACCCGGGAGGCCGCGCCCGGTCCCTGCCCGTCACCATCGAGCCGCTCAAGCTtcccgaggatgaggaggaggaggaggaggaggaggagctacCGGAGCCCCCCCCGGAGCGAGAGCTGGAGCCGCGCAGTCGCCGGGGGTTCGTGGGCGACAGGCTGACCGTCAGCATCATCCCAGAAGCGCCCGGGagcagtgaggaggaggaggaggaggaagaagaggaggaggaggaggaggaggaggaggagacggacTCGGATGGGCCTGTGCTCTACAaagacgaggaggaggaggaggaggatgacgaAGATGACGTCCCAACCAGCGCCCTGGCCAGCCGGGTGAAGCGCAAGGACACGCTGGCCATGAAGCTCAACAGCCGGCCCTCGGCGCCGGAGAACGAGGACCAGAGCGCCGTGCCGTGGCAGAGCCGGGAGCAGTGGGAGGCCGTCCGCGCCCAGATCGGCACCGCGCTCATACGGCGGCTGAGCCAGAGGCCCACCCTCGAGGAGCTGGAGCAGAGGAACATTCTCCAGCCGAAGAACGAGGCAGATCGGCAGGCAGAGAAGCGCGAGATCAAGCGGCGGCTCACCAGGAAGCTGAGCCAGAGACCCACCGTGGCGGAGCTGCAGGAGAGGAAGATCCTGCGCTTCCACGAGTACGTGGAGGTGACCAACGCACACGACTACGACCGCCGGGCCGACAAACCCTGGACCAAGCTCACGCCAGCGGATAAGGCTGCGATCCGAAAGGAACTCAACGAGTTCAAGAGCTCAGAGATGGAGGTTCACGAGGACAGTAGGATCTACACGAGATTTCACCGGCCTTAGCCCCTCCGCCGCCGCAGCAGCACGGAGCACTTATGACGCGTGTCCTGCGAGGGGTGCCCGGGTCCTGCTGCCTCCCTTCACGGACTTGCCTTCATGAATGTACAGAACCACCGCCACCCGTCGGGAATCCTGGACCGATGAGTGCGGCGATCCCGGGAACGACGACTACTATAGATAATCACGATTTATAACCGCAGCACGAGACGAGAGAATGCAGTATTTCGGCCAGACGCCGGGGGGACCGAGTGCCAAGACGACGAGACCGGGGGACGGGCGGGCCGGGGGGGCGGGCGCCGAGCTCTCCACAGCCCTGTCCGCTCGAGGTCTAggttgcctttttattttgtacataacTGTCGATTGTCTTTTATTCTCGGATCAGgcgagaaaataataaaaaataatttaaaaaggggTGAAGACGGGAGGACGACGTGGACGCCAGGACGGCCGCGCCGGGACTCGCTTGGACGCCTGTATAGATTGTAATGTTCCACGGCGTCGGACGCAGCAGAGTCGTAATAATTCAGATCCTAATGCAcaagttttctttgtttttaaatcactactgattttgttttattgtggagGTGTAGTGGGGTTCCCTCATCTCACGCGGGGGGGAGGTTAATGCCCGTTCGTTTCAGGATGTTTTTGttctagttttgttttactgacaTAAACTTCCAGTCTTAATGTAGAGCGTAGCCCGTGCACCCCagtggggggggctgggggtaCGACTGGGACGGGGATGAACGCAAGAAATGACAAATCGTCCAATAAGTGcttttttaacagtttatttCTTCTCGTTGTACTTTTTAATCTTTACCCCTTCAAATGTTGAAATGTGCGGATTGACGAACTCGTCTCATCAGTGGAGAAACACGGCACCTTAATCTTAACGTAAATatggaatgaataaataaataacattcaggGTGACATCTCAGTCTCACAGGAGAAATATCCATCTCTTTGGTTGACAGGGAATAACATTTCAGCaggaaaatgtctttatttttacttaaaatgttttattgtattttgtttggggggggcAGTAGGAAGTGAATTCCTCCTCTGCTGTATAGATTTATTCTGTAGATTAAACTGAATGCGTTGTATATCTTGTCTTCCTTCCTACACagaagaaataatgaaatataataaaagtattataggttgttttgttttttgagcaCATGATGTGATGATTCCGCGACACTACAGCTGGTGGAGACGTTTGCTGGTTCGGTTTTACCCGACGGatgtgtaattttgtttttttaagaagataTTATGGAATTTTAGCGACTGACGGCAACATCTCTATTTAGCGATTTAACAGCGACTACAGAACCGAATTAAAAGCTTACAAAACACTCGCGTTCTCCCGGGTGCTCTGTTACTGTGTGTGGGTTTTGAatcacttgtttgttttgtgtgggtCTGATCTCTCTACGCACTGCTGTGTGAAAGTGTGGGGCAGTGTCTCTGACCTCGGGGTGTGTACTTTACATCTCCCCGCCTCGATGTGTACGCTGACGTTCCTGCTTGGTACCATTCCTGCATTGGGAACCTGGGCCGTCCGTGAAGGAGGCCGTGATCGGAAGATTTGTAACCCGACGCCTTCGGTTCCCGTCACCGAATCTATTAAAGCAGATTCGAGTTCTTCAGACTGACAGGACAGCGGCTCCTGGGCCAAAGGAAGTAGCTGAAGTAATTCAATTTGCTTATTgtttgtaagtgtgtgtgtatctagaGATGTTCTTGTGGGAGTTTATTCTGGCTGGACAACAAGAGTCGCagaatcttttaaaatacacccCCTTACAAATACAGGActacatatttgtttctaatttcAGAATAAAAGGTTTTGATGGCTTTGAGGTTTTCTAGATGTAAGAACTGCGATACGGTGCCTTCAAATCTCTGGAGTAAAAACACTTGTGCAAG
>TU128102
CCGCCAAGCAGCCCCCCGTCCCGCCGCCAAAGCCTGTTAACCGGAATAGCAACCCTGCTTTACTAGCTGAGCTCTCCCAGGCGACGGGCGGCGTGAATCTGATGCCAGTCAAGCCCTCTCCTCCCCTGCCGCCGAAGAGGACCACTCCCGTCACCAAGCGCACCGTGGAGGAGCCGTCCCCTGCCCCGGCCGCGCCCCCCGAGGAGCCTGACGATCAGCTGCCCCCGGCTCCGGGCTCGCCCCAACTGCCCTCGCACATCCCACCCTCCCCGCCC

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0048484 enteric nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:2001045 negative regulation of integrin-mediated signaling pathway biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0001843 neural tube closure biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010832 True 4389 mRNA 0.58 15 2039514 2064344
TU128102 False 275 TUCP 0.71 2 2052146 2056347

Neighbor

gene id symbol gene type direction distance location
AMCG00010831 NA coding upstream 53272 1979619 ~ 1986242 (+)
AMCG00010826 LOC103361910,LOC100710164,LOC106570256,LOC105009339 coding upstream 180089 1850784 ~ 1859425 (+)
AMCG00010825 NA coding upstream 579525 1458829 ~ 1459989 (+)
AMCG00010824 NA coding upstream 581785 1457490 ~ 1457729 (+)
AMCG00010823 ptprub,LOC107705793,LOC107700666,LOC107704844,LOC107755971 coding upstream 586984 1428644 ~ 1452530 (+)
AMCG00010833 rcc1,LOC107700729,LOC107735284 coding downstream 3321 2067665 ~ 2069500 (+)
AMCG00010837 NA coding downstream 294169 2358513 ~ 2363722 (+)
AMCG00010838 NA coding downstream 299866 2364210 ~ 2368559 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding downstream 544929 2609273 ~ 2615203 (+)
AMCG00010846 NA coding downstream 578029 2642373 ~ 2644326 (+)
G102520 NA non-coding upstream 491334 1547810 ~ 1548180 (+)
G102518 NA non-coding upstream 520816 1518399 ~ 1518698 (+)
G102516 NA non-coding upstream 564304 1474998 ~ 1475210 (+)
G102415 NA non-coding upstream 1073309 965961 ~ 966205 (+)
G102396 NA non-coding upstream 1232290 806994 ~ 807224 (+)
G102611 NA non-coding downstream 110452 2174796 ~ 2175064 (+)
G102622 NA non-coding downstream 187759 2252103 ~ 2252470 (+)
G102628 NA non-coding downstream 252593 2316937 ~ 2317570 (+)
G102655 NA non-coding downstream 384856 2449200 ~ 2449881 (+)
G102693 NA non-coding downstream 559262 2623606 ~ 2660858 (+)
AMCG00010830 NA other upstream 75549 1945055 ~ 1963965 (+)
G102535 NA other upstream 238763 1798440 ~ 1800751 (+)
G102531 NA other upstream 247791 1790188 ~ 1791723 (+)
AMCG00010809 pdik1l,LOC107690927 other upstream 914328 1046402 ~ 1125186 (+)
AMCG00010834 NA other downstream 6333 2070677 ~ 2073242 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other downstream 691952 2756296 ~ 2762226 (+)
AMCG00010856 NA other downstream 704796 2769140 ~ 2778033 (+)
AMCG00010884 NA other downstream 1237612 3301956 ~ 3310953 (+)
G102921 NA other downstream 1267240 3331584 ~ 3398506 (+)

Expression


Co-expression Network