AMCG00010833 (rcc1,LOC107700729,LOC107735284)


Basic Information

Item Value
gene id AMCG00010833
gene name rcc1,LOC107700729,LOC107735284
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2067665 ~ 2069500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010833
ATGAAGAAATGCACGCTGCCCGTCCAGGTGCCTGTGGAGGAGACGGTGATAAAAATCGCTTCGGGTAACGACCACCTGGTGATGCTGACCCTGAATGGAGACCTGTTCAGCTCTGGCTGCGGGGAGCAGGGCCAGCTGGGCCGGGTGCCCGAGCGCTTCACCAACAGAGGCGGCAGGAAGGGGTTAAAGCGACTCCTCGAGCCCCAGATTGTCCAGGTTCGGTCCAGAGGCCGTGTCCACTTCAAGGATGTTTTCTGTGGGGCATACTTCACCTTCGCCGTGTCCAAAGATGGGCACGTCTACGGCTTTGGCCTCTCCAATTACCACCAGCTGGGGACATCTGGCACCAACTCCTGTTTCGCTCCAGTCAAGCTGACCGCCTTCAAGAACTCCACCACATCCTGGGTGGGCTTCTCGGGGGGCCAGCACCACACCATCTGCCTGGACTCGGAGGGGAAGGTGTTCGGTCTGGGCCGGGCGGAGTATGGGCGGCTGGGCCTGGGCCAGGGCGCCGAGGAGAAGAGCGAGCCCACGCTGGTGCCGGGCTTGGTGGACGTCCAGGTGGTGGCCTGTGGGGCGTCGGTCAGCTTCGCAGTCACCAagcaagGGGCCGTGTTTGCCTGGGGGATGGGCACCAACCTGCAGCTGGGcactggagaggaggaggacgagtGGAGCCCCGTGGAGATGAAGGGCAAGCAGCTGGAGAAGTGTGCCGTGCTGTCGGTGTCCAGCGGGGGGCAGCACACCGTCCTGCTGGTGACAGAGAAGCAGGAGAGCTGA

Function

symbol description
rcc1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; head; immature eye; neural tube; and pectoral fin musculature. Orthologous to human RCC1 (regulator of chromosome condensation 1).

NR:

description
PREDICTED: regulator of chromosome condensation isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010833 True 783 mRNA 0.63 6 2067665 2069500

Neighbor

gene id symbol gene type direction distance location
AMCG00010831 NA coding upstream 81423 1979619 ~ 1986242 (+)
AMCG00010826 LOC103361910,LOC100710164,LOC106570256,LOC105009339 coding upstream 208240 1850784 ~ 1859425 (+)
AMCG00010825 NA coding upstream 607676 1458829 ~ 1459989 (+)
AMCG00010824 NA coding upstream 609936 1457490 ~ 1457729 (+)
AMCG00010823 ptprub,LOC107705793,LOC107700666,LOC107704844,LOC107755971 coding upstream 615135 1428644 ~ 1452530 (+)
AMCG00010837 NA coding downstream 289013 2358513 ~ 2363722 (+)
AMCG00010838 NA coding downstream 294710 2364210 ~ 2368559 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding downstream 539773 2609273 ~ 2615203 (+)
AMCG00010846 NA coding downstream 572873 2642373 ~ 2644326 (+)
AMCG00010853 NA coding downstream 661530 2731030 ~ 2732094 (+)
G102520 NA non-coding upstream 519485 1547810 ~ 1548180 (+)
G102518 NA non-coding upstream 548967 1518399 ~ 1518698 (+)
G102516 NA non-coding upstream 592455 1474998 ~ 1475210 (+)
G102415 NA non-coding upstream 1101460 965961 ~ 966205 (+)
G102396 NA non-coding upstream 1260441 806994 ~ 807224 (+)
G102611 NA non-coding downstream 105296 2174796 ~ 2175064 (+)
G102622 NA non-coding downstream 182603 2252103 ~ 2252470 (+)
G102628 NA non-coding downstream 247437 2316937 ~ 2317570 (+)
G102655 NA non-coding downstream 379700 2449200 ~ 2449881 (+)
G102693 NA non-coding downstream 554106 2623606 ~ 2660858 (+)
AMCG00010832 NA other upstream 3321 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 103700 1945055 ~ 1963965 (+)
G102535 NA other upstream 266914 1798440 ~ 1800751 (+)
G102531 NA other upstream 275942 1790188 ~ 1791723 (+)
AMCG00010809 pdik1l,LOC107690927 other upstream 942479 1046402 ~ 1125186 (+)
AMCG00010834 NA other downstream 1177 2070677 ~ 2073242 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other downstream 686796 2756296 ~ 2762226 (+)
AMCG00010856 NA other downstream 699640 2769140 ~ 2778033 (+)
AMCG00010884 NA other downstream 1232456 3301956 ~ 3310953 (+)
G102921 NA other downstream 1262084 3331584 ~ 3398506 (+)

Expression


Co-expression Network