AMCG00010834


Basic Information

Item Value
gene id AMCG00010834
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2070677 ~ 2073242 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010834
ATGCCTGGGAAAAAGGCTGCCAAGAGGCCCAGCCCACCGGAGGAAATCAAGTCCTCCAAGAAAGTGAGAGCACGACATGTCTCAGTGGAtggctgtgtctctgtccctgcagTGTCTCACAGCTCCCACAGGAAGCAGGCGGGGCAGGTCCTGGTGCTGGGCCAGGGGGACGTCGGGCAGCTGGGCCTGGGGGAGGACGTCATGGAGAGGAAGAAACCCGCGTTGGTGCCCCTGCCCGAGCCCATCGTGCAGGCCGAGGCAGGGGGGATGCACACGGTCTGCCTCAGCGCCTCCGGCACCGTGAGTTCCTCTCGATGTTTGAATGTTCTTTCTCTTGTCTGTAGTCTTGTGTAG
>TU128107
GTCAGCGACGACCGCGATGCTTCAAAATGCAGCCCCGGAGAGAGAGCCGGGCCGGCGCACAGACGCGCTTTGTCTGCGTGTTGGTGTCGTTGTAACTGTCGCATCGGCTCCCGTCACTCACGGTCTGCTCCGTCTGTCCGGGACAGCGGCGGGGCGAGTGAAAGCGCCTTTGTTTGGGTCTTTCTGGGGATTCGCTCTGGGACGCCAGCTGTCGCGAGTGACGTCATCTTCGGGCGACGCCTTGGCTGCATGTGGCAATAAAGCCGCTCTCGGTAGCAGCTGTGCGCGTCGCTTGTAGAGCTGCTGGGATTAATATGCTCGATGTTGCTGCTCTTTCCATCGAGACAAGACTGTCATTAGACTAAATATAAAGAGGAGTCACAGACGCACATTGACGGGATCGTTGCACCCGGGACTTCAACGAGTTTCTCAGCACTTCTGGTTGCAGTAGACAGCAACCATGCCTGGGAAAAAGGCTGCCAAGAGGCCCAGCCCACCGGAGGAAATCAAGTCCTCCAAGAAAGTGAGAGTGTCTCACAGCTCCCACAGGAAGCAGGCGGGGCAGGTCCTGGTGCTGGGCCAGGGGGACGTCGGGCAGCTGGGCCTGGGGGAGGACGTCATGGAGAGGAAGAAACCCGCGTTGGTGCCCCTGCCCGAGCCCATCGTGCAGGCCGAGGCAGGGGGGATGCACACGGTCTGCCTCAGCGCCTCCGGCACCATCTACACATTCGGCTGCAACGNNNNN
>TU128108
tgtgagtatgtgtatatgtgtatgtgtgtgagtatgtgtgtgagtatgtgtatatgtgtatgtgtgtgtgtgagtatgtgacGCATCATCAGCCGGACGCGCTGTGTGTGCAGGGACTGTGCGGTACTGTCTCTTTAAGAAGGCAGCCATTGCGCCACACGGGGAGAGAGAGCCGGACtgatcagcagcagcagcccgaCCGCAGAGCAGAGCAGTAGACAGCAACCATGCCTGGGAAAAAGGCTGCCAAGAGGCCCAGCCCACCGGAGGAAATCAAGTCCTCCAAGAAAGTGAGAGTGTCTCACAGCTCCCACAGGAAGCAGGCGGGGCAGGTCCTGGTGCTGGGCCAGGGGGACGTCGGGCAGCTGGGCCTGGGGGAGGACGTCATGGAGAGGAAGAAACCCGCGTTGGTGCCCCTGCCCGAGCCCATCGTGCAGGCCGAGGCAGGGGGGATGCACACGGTCTGCCTCAGCGCCTCCGGCACCATCTACACATTCGGCTGCAACGNNNNN
>TU128109
tgtgagtatgtgtatatgtgtatgtgtgtgagtatgtgtgtgagtatgtgtatatgtgtatgtgtgtgtgtgagtatgtgacGCATCATCAGCCGGACGCGCTGTGTGTGCAGGGACTGTGCGGTACTGTCTCTTTAAGAAGGCAGCCATTGCGCCACACGGGGAGAGAGAGCCGGACtgatcagcagcagcagcccgaCCGCAGAGCAGAGTAGACAGCAACCATGCCTGGGAAAAAGGCTGCCAAGAGGCCCAGCCCACCGGAGGAAATCAAGTCCTCCAAGAAAGTGAGAGTGTCTCACAGCTCCCACAGGAAGCAGGCGGGGCAGGTCCTGGTGCTGGGCCAGGGGGACGTCGGGCAGCTGGGCCTGGGGGAGGACGTCATGGAGAGGAAGAAACCCGCGTTGGTGCCCCTGCCCGAGCCCATCGTGCAGGCCGAGGCAGGGGGGATGCACACGGTCTGCCTCAGCGCCTCCGGCACCATCTACACATTCGGCTGCAACGNNNNN
>TU128110
GTCAGCGACGACCGCGATGCTTCAAAATGCAGCCCCGGAGAGAGAGCCGGGCCGGCGCACAGACGCGCTTTGTCTGCGTGTTGGTGTCGTTGTAACTGTCGCATCGGCTCCCGTCACTCACGGTCTGCTCCGTCTGTCCGGGACAGCGGCGGGGCGAGTGAAAGCGCCTTTGTTTGGGTCTTTCTGGGGATTCGCTCTGGGACGCCAGCTGTCGCGAGTGACGTCATCTTCGGGCGACGCCTTGGCTGCATGTGGCAATAAAGCCGCTCTCGGTAGCAGCTGTGCGCGTCGCTTGTAGAGCTGCTGGGATTAATATGCTCGATGTTGCTGCTCTTTCCATCGAGACAAGACTGTCATTAGACTAAATATAAAGAGGAGTCACAGACGCACATTGACGGGATCGTTGCACCCGGGACTTCAACGAGTTTCTCAGCACTTCTGGTTGTAGACAGCAACCATGCCTGGGAAAAAGGCTGCCAAGAGGCCCAGCCCACCGGAGGAAATCAAGTCCTCCAAGAAAGTGAGAGTGTCTCACAGCTCCCACAGGAAGCAGGCGGGGCAGGTCCTGGTGCTGGGCCAGGGGGACGTCGGGCAGCTGGGCCTGGGGGAGGACGTCATGGAGAGGAAGAAACCCGCGTTGGTGCCCCTGCCCGAGCCCATCGTGCAGGCCGAGGCAGGGGGGATGCACACGGTCTGCCTCAGCGCCTCCGGCACCATCTACACATTCGGCTGCAACGNNNNN

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010834 False 354 mRNA 0.62 2 2072229 2073007
TU128107 True 745 TUCP 0.60 4 2071406 2073242
TU128108 False 512 TUCP 0.59 4 2070677 2073242
TU128109 False 509 TUCP 0.59 4 2070677 2073242
TU128110 False 742 TUCP 0.60 4 2071406 2073242

Neighbor

gene id symbol gene type direction distance location
AMCG00010833 rcc1,LOC107700729,LOC107735284 coding upstream 1177 2067665 ~ 2069500 (+)
AMCG00010831 NA coding upstream 84435 1979619 ~ 1986242 (+)
AMCG00010826 LOC103361910,LOC100710164,LOC106570256,LOC105009339 coding upstream 211252 1850784 ~ 1859425 (+)
AMCG00010825 NA coding upstream 610688 1458829 ~ 1459989 (+)
AMCG00010824 NA coding upstream 612948 1457490 ~ 1457729 (+)
AMCG00010837 NA coding downstream 285271 2358513 ~ 2363722 (+)
AMCG00010838 NA coding downstream 290968 2364210 ~ 2368559 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding downstream 536031 2609273 ~ 2615203 (+)
AMCG00010846 NA coding downstream 569131 2642373 ~ 2644326 (+)
AMCG00010853 NA coding downstream 657788 2731030 ~ 2732094 (+)
G102520 NA non-coding upstream 522497 1547810 ~ 1548180 (+)
G102518 NA non-coding upstream 551979 1518399 ~ 1518698 (+)
G102516 NA non-coding upstream 595467 1474998 ~ 1475210 (+)
G102415 NA non-coding upstream 1104472 965961 ~ 966205 (+)
G102396 NA non-coding upstream 1263453 806994 ~ 807224 (+)
G102611 NA non-coding downstream 101554 2174796 ~ 2175064 (+)
G102622 NA non-coding downstream 178861 2252103 ~ 2252470 (+)
G102628 NA non-coding downstream 243695 2316937 ~ 2317570 (+)
G102655 NA non-coding downstream 375958 2449200 ~ 2449881 (+)
G102693 NA non-coding downstream 550364 2623606 ~ 2660858 (+)
AMCG00010832 NA other upstream 6333 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 106712 1945055 ~ 1963965 (+)
G102535 NA other upstream 269926 1798440 ~ 1800751 (+)
G102531 NA other upstream 278954 1790188 ~ 1791723 (+)
AMCG00010809 pdik1l,LOC107690927 other upstream 945491 1046402 ~ 1125186 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other downstream 683054 2756296 ~ 2762226 (+)
AMCG00010856 NA other downstream 695898 2769140 ~ 2778033 (+)
AMCG00010884 NA other downstream 1228714 3301956 ~ 3310953 (+)
G102921 NA other downstream 1258342 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 1258477 3331719 ~ 3338416 (+)

Expression


Co-expression Network