AMCG00010853


Basic Information

Item Value
gene id AMCG00010853
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2731030 ~ 2732094 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010853
ATGGCCACCATTGTCATGGAGCAAATCGGGCGTCTCTTCATCAACCTCCAGCAGGTGCAGGGGGTCCCGCGGATGCTGAAGGAGGCAGCCCCCTCCCTACCCGGCACCCTGAAGGACAGCGACATGCCCCACTTCTTCCGTGAACACTACATCCACGGGGGCTACCGGCCACTCCACCACGGCTGGCGCTACTACTTCCTGTCCCTCTTCCAGCGGCACAACGAGACGATCAACGTGTGGACCCACCTCCTGTCTGCCCTGGTCGTGCTGATGAAGTCCGCCCAGCTGGCAGAGACGGTGGACTTCGTGCGGGACGTCCACGCCTGGCCGCTGTTGGTCCTCCTCCTGTCTGCCTTCGCCTACATGGCCTGCAGCACCCTCGCCCACCTCCTGAGCGCCAAGTCCGAGCTGTCCCACTATGCCTTCTTCTTCCTGGACTACGTCGGGGTGGCGCTCTACCAGTACGGCAGCGCCCTGGTCCACTTCTACTATGCCATCGAGGAGAGTTGGCACTCCTGTTTCCATGGCCTCTTCATGCCCCTCGCCGCCTTCCTGTCCTGGCTCTCTTGCCTGGGCTGCTGCTACGGAAAGTACCAGAGCCACAACTCAACCTACTGGGTCCGCAAGGCGTGTCAGGTGGTGCCCTCTGCCCTGGCCTACACCTGGGACATCAGCCCCGTCGTCCACCGTGTGATCACCTGCTTCTCCTGCTCCCGGGACCCGGCCCTGCCCTTCCACTGCGGCCAGGTGGCCTTCTTCCTGTCCTGTGCCTTCTTCTTCACCCACCAGCTGCCACAGAAATGGTTCCCGGGCAGGTGCGACTTCCTGGGCCAGGGCCACCAGATCTTCCACGTGCTGCTGGCACTGTGCACCCTCAGCCAGATCGAGgcctcccacctggactacctGGGCAGGCGGGCGGTGTACCGACACCTCCACGGCGACTCGGCGGCCCCGTTCTTCTGCGCTCTGTTCGTCCTGACCGGAGTGGCCAGCGCTCTGACCGCGGTCCTCATTACCTCCAAGGTGCGCCGGCTCCTCGGTCGCAGGGACAAGTCCAAGTGA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010853 True 1065 mRNA 0.64 1 2731030 2732094

Neighbor

gene id symbol gene type direction distance location
AMCG00010846 NA coding upstream 86704 2642373 ~ 2644326 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding upstream 115827 2609273 ~ 2615203 (+)
AMCG00010838 NA coding upstream 362471 2364210 ~ 2368559 (+)
AMCG00010837 NA coding upstream 367308 2358513 ~ 2363722 (+)
AMCG00010833 rcc1,LOC107700729,LOC107735284 coding upstream 661530 2067665 ~ 2069500 (+)
AMCG00010855 NA coding downstream 13660 2745754 ~ 2753993 (+)
AMCG00010862 NA coding downstream 49480 2781574 ~ 2786898 (+)
AMCG00010860 stx12 coding downstream 56153 2788247 ~ 2795506 (+)
AMCG00010861 NA coding downstream 96702 2828796 ~ 2833103 (+)
AMCG00010864 NA coding downstream 135114 2867208 ~ 2877101 (+)
G102693 NA non-coding upstream 70172 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 281149 2449200 ~ 2449881 (+)
G102628 NA non-coding upstream 413460 2316937 ~ 2317570 (+)
G102622 NA non-coding upstream 478560 2252103 ~ 2252470 (+)
G102611 NA non-coding upstream 555966 2174796 ~ 2175064 (+)
G102843 NA non-coding downstream 294974 3027068 ~ 3027397 (+)
G102859 NA non-coding downstream 361840 3093934 ~ 3130264 (+)
G102860 NA non-coding downstream 367827 3099921 ~ 3103642 (+)
G102944 NA non-coding downstream 700721 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 702825 3434919 ~ 3457657 (+)
AMCG00010834 NA other upstream 657788 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 666686 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 767065 1945055 ~ 1963965 (+)
G102535 NA other upstream 930279 1798440 ~ 1800751 (+)
G102531 NA other upstream 939307 1790188 ~ 1791723 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other downstream 24202 2756296 ~ 2762226 (+)
AMCG00010856 NA other downstream 37046 2769140 ~ 2778033 (+)
AMCG00010884 NA other downstream 569862 3301956 ~ 3310953 (+)
G102921 NA other downstream 599490 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 599625 3331719 ~ 3338416 (+)

Expression


Co-expression Network