AMCG00010854 (sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135)


Basic Information

Item Value
gene id AMCG00010854
gene name sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2756296 ~ 2762226 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010854
CACATGGTGCGCAGCGGGCTGGGAGGCAGCGGGGCAGGCGCGGCGATTGCAGGGgaagagacacacaaagacgGACGCAGACCCGCAGCCATGGTCGTCAAACTGTACTACACCACCGTCACCGCCTCCAGGGAGGTGAAGTCCCAGCAGTCCGAGGTGATGCGCATCCTGGAGAGCAAGGGCATCCAGTTTGAGCTGATCGACATCTCGGTGGGCAACGCCGTGCGCGAGGAGATGAGGACCAAGGCTGGCAAGCCCACCGCCGTGCCGCCCCAGATATTCAACGGGGACGACTACTGTGgaGACTACCAGATGTTCTCGGAGGCGGTGGAGGACGACGCCGTGGAGAAGTTCCTGAAGCTGGACTGAGAGGTCCACAGTGAGGGGGCTGGAGGGGCTCGGACCGCAGCTGGCGCCTTTTGCCCGTTTTTTTCCCAACGTCATGCCAAAAAAAAACGAGCACATCCTCGCGGGTCACCCACCCAGCAGCCCCGTGTATCGCCTGGATGCAACACGCTTCCCTGCCAGTCATCTGTCCcgctttgctgttgttttgtttcgttcTTTTCTCTCTAATCTTCCTCATTCCAGAGTAAATCTCCTCGATGTCTCAACCGCTAGGGTGAATAGGAAATGTGGAGGGTAGAGTGGCGAATAGACGAGCTGATCTGTGATTGGTCGACTCGCCCGCAGTGCCACACTGATAGGAGCGGATATTCTCATTAGTAGGAAGAGTTataatctttgttttgtttcgttatTCGATAGAAAGCACTTGTTTAAGAAGCACTGGCCGCATTAAACTCATGCACACGCAAATCACGGGACCTTAAACTCCGCCTCTGCTCTGACTTTAGATCAGCCCTTTTTCTATCAAACTTTTACACCTCGACACTGTAAACCTCCTAGTTTagtggtgtgtgtatataaccTGATGTTTACAGTCTAAACTCTTAACCAGGAACGAACCTATTTTCTGTGGGAGGCGGTTCAGTGGTGTTTACTTGGTGCCAATGATCCATCGCCCGTGAAGCCGCCTCTTCCTGCAGGTCTTAATCCAGCCGAGTCCCCCGAACCTCTTAACGAAATAGTCTTACTTCCAACATCCAAAGAAACATCGTCTTCGTAGATTTCCAAGTCTTAAAACGGGTTTGAGATAACGCTGGCagtaatttccttttaattaaatgatagttaGTCGGATGCTTCCTCATTAGATTGCAGTCCTATCCGTCTGAGTGTCCATCCAAGTATTGAAAGGGTCCGACCCCGTTCTCGACGCAAGCAGTCCCTCGTTGGACCTCGCTCCTCGCTGAAGCACATTCCCACACCTTCGCTAGTCTGTTGGTGACTGAGATGACGATTCCTTGGTGTTGAGGTCTCTGCAGAGTTCATCTTGGGGACCTCCCACTAGCTTGTCACAACACAAAAGCTGAGTCACTCTTACCTCTCcaatatgtatgaaataaacgtttttttgtttttgtttcgttCTTCTCCAAACCATCTGATCATTTTCCCTTAAGGACAGACCTTCGAGTTCTTCTGATACTCCTGAGATGCAGTATTGAAATGTCTATGCACTAGTTTAAAGCGTTTCCTGTTGGTAGCACACGTCACATTTAAGCAACACGGAAACACAAAGTCACTTTCAAGTCCAGTGTTTTTTGAATGTGTTGCTGGACCAGagtttgtattaattgttcCCAGATTATGTACTCTTTTGTGTGATGTCAGCTTGGCTCCTGTCCTGGCCATCAGCAGTGCAGTTCGGTCTCCTCgagtgatgggggggggggagtctCGGGGAGTTTTCTCTAATGGTTCGTGTTGGCGGGGAGAGGGACGTCATGCTTGATTTACATCAGTTGGCTCGGGCCGTTCACTGCTTTAGCCGTGCTCCTCTCAATCAGTTTGTGTGGAGGCCAAGTTGAGTCGTATAGCGGCTCTCTGGCTTTTTTGGGCCTGGCTGGGGTCCGTCTCATCATCCTCTGTACCTCTAGGCAGTTAAaactaatgcattttgtttgttttttgttcagagAGTCTGTCCTGTCATTCCTGCCGCTGGTCTAGTCTCTGAAGGCCAGGGTAGTGTAGTCCTGCTAACCAGCAATCAGTATTTCAGCCTCTCGGACGCACCGGCGCCCCGGGGAGACGCAGTATCTCACAATGCAGTAGGGACAGTGACATCCAAAGGTTTTGGCAGCGCACCTCTGCCACTATAATGCAGTAACCAGGATGGCGTTGAGAATGTTGGTGCTCTAGCGGACTTTGTTTCTGGACTGGGCCGGCACACAGAACCAGACccacttccctctctctccagtggACTGAAAAGGGGGTGGGGATGACGGGGGCGACTTTTATTAAACCTGGGATCACAACACACTCTCtcgacacagagacacactcattTGTTTCATTCCACTGTCTCACACCCACACCCCTGCCCTTCCTACCCCACcaccctctctctgtttttcgGGCACAGATCGGGACATTCCACGAGTCACGCTTTATTCGCTCGGCCCTGCCCCGGGACCCCACCGCGCTGCTTGCTTAATCGCACCCTTAAGTCACAATCTGGCTGATCAgagtgttttcattattataaaccAGTGGGGAAATATAACCTTTGTGCTTAAAGTCTGCAAGCTGGACATTAAAAAAACTTAagcaaatgattagttcaatttcGGTTTCAGTTGCTTGATTGAAACCTCGGCGGACTGTGGGGCCCCCAGGAGCCGGGCTGGGAACCTCTGCTCTGAGCTATTGCTTTGCCTTTTGGACCAATGCCCTTTTTTTGGCCAAGAAAAAAACGAAAGAAAAGCGATTGTCTTCCAAGAagatgataataaatatatgggAATATCAAATAAAGCGGACAATTGTGTAgtgatttgtgttgttttttttgtttttctggagttctgtacttctgttttctgaaaaatactttaaaatattgcGTTAGATCTTAGCAAATTCAAACTGCACCACATAAAAACTGTGGATAAAATGAGGTCGGTCTTTCCACCcaggaaaacatgtttgtagctttaaatgcaaaaaaggCTCCAGACGAGGCAATGGTTTTGTGTAACAAATTGACCCTCAATTAAACTGAATTCCCAGACTCATCTCTCTGTGATTAGCATCAATAGACTCCTTGCATAAAGATTTCAATTATACATGTTCTACTACAGATAGATAATGTACAGTGCAAATCATGGAAGtgtgcaaaaacaaatctttattgTTGATGTCAGTGTATCCATTTATAAAGAGTGGGGCTTTCAAGTGACGCACCCTGCCTTCCAACAGTTTCTCCAAACCTCCCCAGAAAAAACTCAACTCTGAaccacagagaaacaaaataccaTCAGTGCGGTCAAGAATCTCCCAGCCCGTTGTGTCCCAGACCGTTTGTAATTAGTGTGTACACTAGACCCGTGCGTTCGGGCACAACAGACACTCGGCACACTGCACATCTGCACACCGCTCCTCTCCGCGAGTCGATATTCCCCCCGTGGGCTCCCTCTCGCATCGTGGTCCAGGAATGCACTCACTGTGTCAGCGAGGAACGCCACGCCTTCGCGGAGGCCCCAGAAGAGAGAGACTCGGCACTGGGTGTGGTTCCAAAGGAACAGCTGTGCTCTGCAAAGGAATCCTGACATCTTCGTGCCAAGACTGATTAATGGCTATTCCTCATATTTATTAGAACAGAGCTCCCTAATTCTCCTcaggtgtttgttttaaagggttGGAACCCCAAGCACACAGAGCATCCACATAGGCACAGCAGCAGGTGCTTCTGTTAGTTTTATTGTTACAAGGCTGGAGCTATTAGTGTCAA
>TU128314
GTGCGCAGCGGGCTGGGAGGCAGCGGGGCAGGCGCGGCGATTGCAGGGgaagagacacacaaagacgGACGCAGACCCGCAGCCATGGTCGTCAAACTGTACTACACCACCGTCACCGCCTCCAGGGAGGTGAAGTCCCAGCAGTCCGAGGTGATGCGCATCCTGGAGAGCAAGGGCATCCAGTTTGAGCTGATCGACATCTCGGTGGGCAACGCCGTGCGCGAGGAGATGAGGACCAAGGCTGGCAAGCCCACCGCCGTGCCGCCCCAGATATTCAACGGGGACGACTACTGTGgaGACTACCAGATGTTCTCGGAGGCGGTGGAGGACGACGCCGTGGAGAAGTTCCTGAAGCTGGACTGAGAGGTCCACAGTGAGGGGGCTGGAGGGGCTCGGACCGCAGCTGGCGCCTTTTGCCCGTTTTTTTCCCAACGTCATGCCAAAAAAAAACGAGCACATCCTCGCGGGTCACCCACCCAGCAGCCCCGTGTATCGCCTGGATGCAACACGCTTCCCTGCCAGTCATCTGTCCcgctttgctgttgttttgtttcgttcTTTTCTCTCTAATCTTCCTCATTCCAGAGTAAATCTCCTCGATGTCTCAACCGCTAGGGTGAATAGGAAATGTGGAGGGTAGAGTGGCGAATAGACGAGCTGATCTGTGATTGGTCGACTCGCCCGCAGTGCCACACTGATAGGAGCGGATATTCTCATTAGTAGGAAGAGTTataatctttgttttgtttcgttatTCGATAGAAAGCACTTGTTTAAGAAGCACTGGCCGCATTAAACTCATGCACACGCAAATCACGGGACCTTAAACTCCGCCTCTGCTCTGACTTTAGATCAGCCCTTTTTCTATCAAACTTTTACACCTCGACACTGTAAACCTCCTAGTTTagtggtgtgtgtatataaccTGATGTTTACAGTCTAAACTCTTAACCAGGAACGAACCTATTTTCTGTGGGAGGCGGTTCAGTGGTGTTTACTTGGTGCCAATGATCCATCGCCCGTGAAGCCGCCTCTTCCTGCAGGTCTTAATCCAGCCGAGTCCCCCGAACCTCTTAACGAAATAGTCTTACTTCCAACATCCAAAGAAACATCGTCTTCGTAGATTTCCAAGTCTTAAAACGGGTTTGAGATAACGCTGGCagtaatttccttttaattaaatgatagttaGTCGGATGCTTCCTCATTAGATTGCAGTCCTATCCGTCTGAGTGTCCATCCAAGTATTGAAAGGGTCCGACCCCGTTCTCGACGCAAGCAGTCCCTCGTTGGACCTCGCTCCTCGCTGAAGCACATTCCCACACCTTCGCTAGTCTGTTGGTGACTGAGATGACGATTCCTTGGTGTTGAGGTCTCTGCAGAGTTCATCTTGGGGACCTCCCACTAGCTTGTCACAACACAAAAGCTGAGTCACTCTTACCTCTCcaatatgtatgaaataaacgtttttttgtttttgtttcgttCTTCTCCAAACCATCTGATCATTTTCCCTTAAGGACAGACCTTCGAGTTCTTCTGATACTCCTGAGATGCAGTATTGAAATGTCTATGCACTAGTTTAAAGCGTTTCCTGTTGGTAGCACACGTCACATTTAAGCAACACGGAAACACAAAGTCACTTTCAAGTCCAGTGTTTTTTGAATGTGTTGCTGGACCAGagtttgtattaattgttcCCAGATTATGTACTCTTTTGTGTGATGTCAGCTTGGCTCCTGTCCTGGCCATCAGCAGTGCAGTTCGGTCTCCTCgagtgatgggggggggggagtctCGGGGAGTTTTCTCTAATGGTTCGTGTTGGCGGGGAGAGGGACGTCATGCTTGATTTACATCAGTTGGCTCGGGCCGTTCACTGCTTTAGCCGTGCTCCTCTCAATCAGTTTGTGTGGAGGCCAAGTTGAGTCGTATAGCGGCTCTCTGGCTTTTTTGGGCCTGGCTGGGGTCCGTCTCATCATCCTCTGTACCTCTAGGCAGTTAAaactaatgcattttgtttgttttttgttcagagAGTCTGTCCTGTCATTCCTGCCGCTGGTCTAGTCTCTGAAGGCCAGGGTAGTGTAGTCCTGCTAACCAGCAATCAGTATTTCAGCCTCTCGGACGCACCGGCGCCCCGGGGAGACGCAGTATCTCACAATGCAGTAGGGACAGTGACATCCAAAGGTTTTGGCAGCGCACCTCTGCCACTATAATGCAGTAACCAGGATGGCGTTGAGAATGTTGGTGCTCTAGCGGACTTTGTTTCTGGACTGGGCCGGCACACAGAACCAGACccacttccctctctctccagtggACTGAAAAGGGGGTGGGGATGACGGGGGCGACTTTTATTAAACCTGGGATCACAACACACTCTCtcgacacagagacacactcattTGTTTCATTCCACTGTCTCACACCCACACCCCTGCCCTTCCTACCCCACcaccctctctctgtttttcgGGCACAGATCGGGACATTCCACGAGTCACGCTTTATTCGCTCGGCCCTGCCCCGGGACCCCACCGCGCTGCTTGCTTAATCGCACCCTTAAGTCACAATCTGGCTGATCAgagtgttttcattattataaaccAGTGGGGAAATATAACCTTTGTGCTTAAAGTCTGCAAGCTGGACATTAAAAAAACTTAagcaaatgattagttcaatttcGGTTTCAGTTGCTTGATTGAAACCTCGGCGGACTGTGGGGCCCCCAGGAGCCGGGCTGGGAACCTCTGCTCTGAGCTATTGCTTTGCCTTTTGGACCAATGCCCTTTTTTTGGCCAAGAAAAAAACGAAAGAAAAGCGATTGTCTTCCAAGAagatgataataaatatatgggAATATCAAATAAAGCGGACAATTGTGTAgtgatttgtgttgttttttttgtttttctggagttctgtacttctgttttctgaaaaatactttaaaatattgcGTTAGATCTTAGCAAATTCAAACTGCACCACATAAAAACTGTGGATAAAATGAGGTCGGTCTTTCCACCcaggaaaacatgtttgtagctttaaatgcaaaaaaggCTCCAGACGAGGCAATGGTTTTGTGTAACAAATTGACCCTCAATTAAACTGAATTCCCAGACTC

Function

symbol description
sh3bgrl3 Predicted to enable protein-disulfide reductase activity. Is expressed in central nervous system; digestive system; notochord; otic vesicle; and sensory system. Orthologous to human SH3BGRL3 (SH3 domain binding glutamate rich protein like 3).

NR:

description
PREDICTED: SH3 domain-binding glutamic acid-rich-like protein 3

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K23740 SH3BGR; SH3 domain-binding glutamic acid-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010854 True 3862 mRNA 0.49 3 2756296 2762226
TU128314 False 3139 TUCP 0.49 3 2756302 2761509

Neighbor

gene id symbol gene type direction distance location
AMCG00010855 NA coding upstream 2303 2745754 ~ 2753993 (+)
AMCG00010853 NA coding upstream 24202 2731030 ~ 2732094 (+)
AMCG00010846 NA coding upstream 111970 2642373 ~ 2644326 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding upstream 141093 2609273 ~ 2615203 (+)
AMCG00010838 NA coding upstream 387737 2364210 ~ 2368559 (+)
AMCG00010862 NA coding downstream 19348 2781574 ~ 2786898 (+)
AMCG00010860 stx12 coding downstream 26021 2788247 ~ 2795506 (+)
AMCG00010861 NA coding downstream 66570 2828796 ~ 2833103 (+)
AMCG00010864 NA coding downstream 104982 2867208 ~ 2877101 (+)
AMCG00010866 NA coding downstream 130792 2893018 ~ 2895324 (+)
G102693 NA non-coding upstream 95438 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 306415 2449200 ~ 2449881 (+)
G102628 NA non-coding upstream 438726 2316937 ~ 2317570 (+)
G102622 NA non-coding upstream 503826 2252103 ~ 2252470 (+)
G102611 NA non-coding upstream 581232 2174796 ~ 2175064 (+)
G102843 NA non-coding downstream 264842 3027068 ~ 3027397 (+)
G102859 NA non-coding downstream 331708 3093934 ~ 3130264 (+)
G102860 NA non-coding downstream 337695 3099921 ~ 3103642 (+)
G102944 NA non-coding downstream 670589 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 672693 3434919 ~ 3457657 (+)
AMCG00010834 NA other upstream 683054 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 691952 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 792331 1945055 ~ 1963965 (+)
G102535 NA other upstream 955545 1798440 ~ 1800751 (+)
G102531 NA other upstream 964573 1790188 ~ 1791723 (+)
AMCG00010856 NA other downstream 6914 2769140 ~ 2778033 (+)
AMCG00010884 NA other downstream 539730 3301956 ~ 3310953 (+)
G102921 NA other downstream 569358 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 569493 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 658856 3421082 ~ 3428429 (+)

Expression


Co-expression Network