AMCG00010856


Basic Information

Item Value
gene id AMCG00010856
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2769140 ~ 2778033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010856
ATGTTGTACACCGAACTGTCCTTCCTCTACTACGATGCCATTTCTGTCCAGTCTGGAGTCAGGCTGTGGGCCCCGCACGAGGAAACCACCGCAtcgcagagggagggagagctgGTGGCAACGTGCTCTCAGCTGCAGAGCCAGGTCTCGGAGATGGAGCGGTTCTTGAACGACTACGGGATGGTGTGGGTGGGAGAGAGCACGCCCCGGGCTTATCTCCAGGATCCTGGGGAGGAAGAGAGCGAGCGAACACAGCCCTGGAAACAAGGGCAACCTTGGACCTGGAAACAGAGAAATCCTCAGAGGCCACGACGGCAGCTGGTCTGTCCTCTCGCTGTTGTTGACGTCGTTGCGCTGGGCGACCGCGCGCTTGCCCGGGGACCGACGTCACCAGCGCGCGGGACCGCAGGGCGGAAGTGGAGCCGCACAATTAATGGCGTTGAAGCCCCGAGCAGAGAGGACCGCGACGCGCCGactcATGTAACGAATGCCACAAATGAGAAGCCCTCCTCGGCGGCCGACGCGCTGGCCGGTCCGCTcgtcctgcagctgctgctgacgctGATTCCCGTCCTGCTGTCCAGGCTCTTCTGACCCGCGGCTGGAGGAGCCCGGGGCCCCAGCGCCAGGGTGGCCCCATTGTGGCACTGAGCGAGCTTGGTGCATGTGGctatagaaaagaaaagaaaagaaaagaaaagatgcGTGTCATTACCCACCATTATACGCGGCTGGCGGTGGACGCACTCAGGCAGTGAAGCCGCTGTCTGTCGGTGCGGCTGCAACGCTGTTCAGATCTCATGAAACCTCAGAAAGACCATGTACGctttttatttgcaatataaTCGATGGGTTTAAATCGTATTGAGTACTTTTAACAATGTCGGTGGAGCCAGATGTTGCTTTTCTTTGCAGATTTAAACACATTAGCAATGATCTGTGATGTcttgttgaaaaaataaacttttcctAGCACGTTCATGTGTATTACTCTTGTGGTCATTTTACGGTTGCTACATGATTAGTCCGCAGTTTActtccaaatatatattcagaaataaGTGATCCACcattataataaagtaaatggAAA
>TU128319
AGGACAGAAAGATTGCTGTTCTAGAGGAGAAACTGCAAATCCTTCAGAGATCAAAAgAGGAAACCACCGCAtcgcagagggagggagagctgGTGGCAACGTGCTCTCAGCTGCAGAGCCAGGTCTCGGAGATGGAGCGGTTCTTGAACGACTACGGGATGGTGTGGGTGGGAGAGAGCACGCCCCGGGCTTATCTCCAGGATCCTGGGGAGGAAGAGAGCGAGCGAACACAGCCCTGGAAACAAG
>TU128320
TGCAGCACTCACTccgtctctcactctgtctgtctctcacactcactcactcacaggaGCCTCAGCAAACATGACCAGACTTCTGCTCTCCGTCTTATTGTGTTCCGTGATCCTGCTGGCTGATGCTCagactcATGTAACGAATGCCACAAATGAGAAGCCCTCCTCGGCGGCCGACGCGCTGGCCGGTCCGCTcgtcctgcagctgctgctgacgctGATTCCCGTCCTGCTGTCCAGGCTCTTCTGACCCGCGGCTGGAGGAGCCCGGGGCCCCAGCGCCAGGGTGGCCCCATTGTGGCACTGAGCGAGCTTGGTGCATGTGGctatagaaaagaaaagaaaagaaaagaaaagatgcGTGTCATTACCCACCATTATACGCGGCTGGCGGTGGACGCACTCAGGCAGTGAAGCCGCTGTCTGTCGGTGCGGCTGCAACGCTGTTCAGATCTCATGAAACCTCAGAAAGACCATGTACGctttttatttgcaatataaTCGATGGGTTTAAATCGTATTGAGTACTTTTAACAATGTCGGTGGAGCCAGATGTTGCTTTTCTTTGCAGATTTAAACACATTAGCAATGATCTGTGATGTcttgttgaaaaaataaacttttcctAGCACGTT

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010856 True 1093 mRNA 0.54 7 2769599 2778033
TU128319 False 246 lncRNA 0.57 3 2769140 2770473
TU128320 False 635 lncRNA 0.51 3 2776464 2777919

Neighbor

gene id symbol gene type direction distance location
AMCG00010855 NA coding upstream 15147 2745754 ~ 2753993 (+)
AMCG00010853 NA coding upstream 37046 2731030 ~ 2732094 (+)
AMCG00010846 NA coding upstream 124814 2642373 ~ 2644326 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding upstream 153937 2609273 ~ 2615203 (+)
AMCG00010838 NA coding upstream 400581 2364210 ~ 2368559 (+)
AMCG00010862 NA coding downstream 3541 2781574 ~ 2786898 (+)
AMCG00010860 stx12 coding downstream 10214 2788247 ~ 2795506 (+)
AMCG00010861 NA coding downstream 50763 2828796 ~ 2833103 (+)
AMCG00010864 NA coding downstream 89175 2867208 ~ 2877101 (+)
AMCG00010866 NA coding downstream 114985 2893018 ~ 2895324 (+)
G102693 NA non-coding upstream 108282 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 319259 2449200 ~ 2449881 (+)
G102628 NA non-coding upstream 451570 2316937 ~ 2317570 (+)
G102622 NA non-coding upstream 516670 2252103 ~ 2252470 (+)
G102611 NA non-coding upstream 594076 2174796 ~ 2175064 (+)
G102843 NA non-coding downstream 249035 3027068 ~ 3027397 (+)
G102859 NA non-coding downstream 315901 3093934 ~ 3130264 (+)
G102860 NA non-coding downstream 321888 3099921 ~ 3103642 (+)
G102944 NA non-coding downstream 654782 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 656886 3434919 ~ 3457657 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other upstream 6914 2756296 ~ 2762226 (+)
AMCG00010834 NA other upstream 695898 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 704796 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 805175 1945055 ~ 1963965 (+)
G102535 NA other upstream 968389 1798440 ~ 1800751 (+)
AMCG00010884 NA other downstream 523923 3301956 ~ 3310953 (+)
G102921 NA other downstream 553551 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 553686 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 643049 3421082 ~ 3428429 (+)
G102947 NA other downstream 658585 3436618 ~ 3443534 (+)

Expression


Co-expression Network