AMCG00010858 (wdtc1,LOC106605082,LOC106583467)


Basic Information

Item Value
gene id AMCG00010858
gene name wdtc1,LOC106605082,LOC106583467
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2712527 ~ 2723800 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010858
TGCGTTGCTATTCACCAAAGTTCTTACGCCCGCATTTTGCGTGAGCGCCGTTATTACGAGGCGGGCTACGCTCAAAACATTGCGTAAGAGTTTTAGAGGAGGGATCAGTGCTGGAACGGGAGTTGTGCAGAAAAAGATATTGAAGTGCAAATTCCGAGGATGGACACATAATACGCATTAATTGATATTTGCTGATCTCCACCCTGGACCCTGTTGTTCGGACACATGCATGTTTGCGGCCGGGGCTGAATTAATCAGACTCCGTTTTTGTCGGACTGCTGCGGATCCCAGGCCAGACAGGTACGTGCGCTCTGTGTCTCGGTGTGTTCCCGTCTGTCCAGCCGTATGCGAGAAGAAGACGTGCGACATGTCCCGGGGAGCTGCGTCCTGCCCCTGCCGAGCCGCACAGGTCCACCAGAGACAGCCCGCTGCGGTTTGCATGTGGTCAGCTGTCAAGTCCTGCAAAGCGGCATCGGTGCGGCAGGTGGGACTCGTCCCGGGACGCGGTGTCGCCGCTGGTTCCGTCCCCTCGCCGCGACGCAGCAGTGTGTCAACAAGTTCTGCACCGGGAACAAACAAGTTCTGCTCCTGGAGTTGGCGTGACGTCACGGCTCAGAAgatgacatcatcatcatcatcatcggcTGTCAAACAGGGACGAGATCGGTTTGTGGACAGCTGATCGTGCCTGGACTGCCATTGCCGTTTCCATCCTTGAGTCTCGTCCAGTAATAGTGTCACAAGTTTATATACATCAAGAATAGCCGCTCGACTGATCTGTATTGGGTTCATCTATCGAGTGATGCGTTTATTGACATGCTTTACATTGATGTGCATTCAGCGCGGATGgtggtttgttttccttcattgcatgtgatcggtgtgtgtgtgtttagttttctAGACTTCATCCCATTGTTTTGAATGACGTCAGCAGTGAGATGCCTGTATGTCCCCCCATGGACACATACTTCTGAGTCTGCAGTTTCTGCTCAGACAATAGTTTGGTGCGGCTGCTTTGTGTGGAGACTCAAACTCACAATGTCAAATGTGTGGCTCAATATAATGCGCAGTTAAGCAACGGATATTTGCTCCAGAGTTTCTGAGTTCAGATAATGATACTGCAGGAGCTGGCAGCACGTCTGTGAGTCCGAAAATGATGATCTTCTTGGACATTTACACAGTCTCAGTCGCTGCCTTTGCTGATGTAAAATAGCTGGAGTATCTGTTAGTTAGGGAGAGAACATAGTAACACTGAAGTGGCAGGAGCGTGTGTGTCTGAAACAGCACTTCCTGGATCTTTCTCAGGCCTGAATCATGTGTCCTGGTGTGCATTGATTTGACTCTCACCTCTGGTGGTTTGCACTCTGATTACCGTCTGCAGGTTTAGCAAAGCGCTCCTGAAAACGCTGCCCAGGTCGGGGGCTCAGGGGAAGTAAATCAGTGACGCACGACTCTCTGAAGCCCACGAGTGACTTTGCGCCATGCTTgacgttttgttgttgtgtttgctgGGATCTAAGTGGACGGCAAATTTCAATAAATCGCAAATAACGCCTTCAAGTAaagagttgttttgtttttaatcgcACAGCTGCAGATGACCGGATCATCCTCCCCTGATCGCTCGCACTGCTTTGAtccctgtgttgttgttgtgtgatGTGTGACGTGTTTCTTCTCCGCAGTGAAGACGACACTGTGATGCAGGACTGTGCCGATCGTCTCTCTGTTTCGTTCTGCAGCCAATTAAATGTCTTTGCCGCGGGGAAGCTTTCACGAACAGGAACCAGGCTGGACCCGATGCGCGCTGACTCCTAACCCCGTCTTTACCTTATGATTTGCTGTGAGGCTATGGCGACTGTGAACATCACCAGTGACATCCTGCACAGGCAGATCAGGAGACGCTATCATGTCACAGACCCTTTAATAAAGAGACTGGGGCTGGAGGCAGAGCTACAGGGTCACTCGGGCTGCGTGAACTGCCTGGAATGGAACGAGAAGGGAGAGTTGTTGGCGTCCGGCTCAGACGATCAGCACGCCATCATCTGGGATCCGTTCCACCACAAGAAACTCCTAACTATGCACACGGGCCACTCCGCCAACATCTTTTCAGTCAAGTTCCTGCCTCACTCTAATGATCGTATCCTGGTGACCGGCGCCGCGGACTCCAAAGTGCACGTCCACGACCTGAGCGTCAAGGAGACCATCCACATGTTCTCCGACCACACCAACCGCGTCAAGAGGATCGCCACCGCGCCGATGTGGCCCAACACCTTCTGGAGCGCGGCGGAGGATGGGGTCATCAGgCAGTACGACCTGAGGGAGAGCAGCAAGCGCTCCGAGGTGCTCATCGACCTGACGGAGTACTGCGGACAGCTGGTGGAGGCCAAGTGTCTCGCCATCAACCCCCGAGACAACAACTACCTGGCCGTGGGCGCCAATGGGCCCTTCGTGCGTCTCTACGACATCCGCATGATCCACAATCACAGGTACGCGGCGTCCACCCCACTGACCGCGCGGCCGCAGGTGGCAGGAGCAGTTTCCTGTGCGTCGCTGTTCGCCTCTCACTGCCTCAGATGTTCCCGTTTGTGTTGCAGGAAGTCAATGAGCCAGAGCACGTCGGCGGGGGTGCACACGTTCTGCGAGAGGCAGAAACCCATCCCTGACGGCGCCGGACAGTATTATGTAGCAGGTCATCTTCCAGTTAAACTACCTGATTACAACAACCGGCTGAGAGTCCTGGTGGCGACGTATGTGACCTTCAGCCCCGACGGCACTGAGCTGCTGGTCAACATGGGTGGGGAGCAGGTGTATTTATTCGACTTGACGTTCAAGCAGAGGCCGTACACCTTTCTGTTGCCAAAAAAGTGCCACCCGTCGGGAGAAGTTCAAAATGGAAAAACCTCCACGAACGGCGTCTCGAACGGGATCCACCTGCCCAGCAACTGCTTCCGCCTGCCGGACAGCAAGATCTGTAACAGTGCGTCTGGGgagctgcccccccacctggAGAAGATCAAGCAGCTGGCCAATGACGCGTTCGCCCGGCAGCAGTGGACCCAGGCCATCCAGCTGTACAGCCGCGGCATCCAGGAGGCCGGCAAGAACGCCATGCTGTACGGGAACCGGGCGGCCGCCTACATGAAGCGCAAgtgGGACGGGGACCACTACGACGCCCTGAGGGACTGTCTGAAGGCCATCTCCCTGAACCCCGGGCACCTGAAGGCGCACTTCCGCTTGGCCCGCTGCCTGTTCGAGCTCAAGTATGTGGCCGAGGCGCTGGAGTGCCTGGACGACTTCAGGGGCAAGTTCCCAGAGCAGGCCCACAGCAGCGCCTGCGACGCACTGGACAAGGACATCCGGGCGGCGCTCTTCTCCAAGACCGACGGCACGGAAGACAAGAAGGCGGGCGGGCCAATCCGATTCCGCACGTTCGGGAGGAACAACTCGGTCTCGGAGGACGAGGTGGTGCTGAGGGAGAGGAGCTACGACTACAAGCACCGATACTGCGGCCACTGCAACACCACCACCGACATCAAGGAGGCCAACTTCTTCGGCAGtAAAGGACAGTACATTGTGAGCGGCTCGGACGATGGCTCCTTCTTCATCTGGGAGAAGGAGACGACCAACCTGGTGCGCATCCTGCAGGGGGACGAGTCCATCGTCAACTGCCTGCAGCCCCACCCCAGCTACTGCTTCCTGGCCACCAGCGGCATCGACCCGGTGGTGCGGCTCTGGAATGCCCGACCCGAGAGCGAGGATGTGAACGGCAGAGTGGTGGAGGACATGGAGGGGGCGGCCCAGGCCAACCAGCGCCGCATGAACGCCGACCCGCTGGAGGTGATGCTGCTCAACATGGGCTACCGGATCACGGGGCTGAGCAGCGGGGGGCCCGAGGGCTCGGACGATGAGGACAGCTCTGAGGGCCAGGTCCAGTGCCGGCCCAGCTAGAGAGCCCTGGGGGCGGCCAGCCGGCCCAGACTGTTGGGGGCACCGCAGCCCTGTTCTTCAcctcttctgttttcttttcgtTTCGTTTCTTTCTCCTCCCACAAAACCTGTGACTGGAAGGACTACACTATGCATTCAAATGTAGAAAAGTAAGGGAGTGGAAAAGGGGCCCCCACCACCTTCCCTTCCCTCCGGGGGAATATTCTGAGGACGAGACTGGAGGTGTCGGATGGGTGGCTTTTGCGGAGGATGAGAGTTTggcacttttttcccccctgttttttgttttcctggtcCCGGATTCGGGGGACAGACATAAAAGAATGAAATGAAGACCACCGGCCGCAGTCAAGACCCCCAGTCGCTCCCGAGTCCGAGCCCGGCTGCTCTCCCACTGATTTGTGTCGTTTTAATTTCCCTGTCTGTATGCTTCCACGTATTGTCGGGGGAGGGGAACGAGGACGCTCACCTCCGCTCCGCTTTTGCACATTTATAAAAGGTAGCGCGAACGTCGGCTCTCCGAGGGGGACTGGACCTTGGATGGATTTCGGATCTCTGTCGGGGGAACCGGAATCTCTTTTGTTCGAGTGAAAATAAAGGGCGCCACATTTGTCTGGGCCCGTCGGTACCGCTCGGTGGCGAGAAGATAATGCGACACAGAGGACGGGCCACTATGGCTTTAGTCAGGATAGTGTGGGTGGTTGAGGGgactgtctttttgttttagtgaGGAAACTTCCTTGGCAAACAGTGTTATGTTTGTGCGATATCacgacacacacagactctctagttttattttcagtgctcAGTATCTGGAGGGGAAGGAACAAACACAGATAATGACGTGTGTGTGAAAGCTATTGTTGCTTCCAGTTCCAGGGTTGATCTTTAAAGTGTTGGTTTGTCTTGAGGATCAGCTGTATTTGCATTTAGAAACATTATGGCTGTTGCTGATGGATAtttctccatttatttatttattttttcctctgggTGTGCATTTACCAGCACGAGTCATTGtgcaacttttttttacatctcGACATGGACAGGCATAAGAAATCCACACATTAGCAAGTTTAGACGTTTATGGAGAAAAGCTCCGCCTTTCCACGGAAATGGGTctgatttcgttttttttttctccctccttctccaAAACGATGGCCAGGTCTCCACGCACACACGAGTGATGGATTTCGACATGGATTTTTGCACCCAAACGACCTAGTTTTCCTATAAATCGATCGCATCAGTCGATCGATACTTTGCTGCCCGGCGCTTCGTTTGAATCTAGTGTCCCGTGTTCGCAGGCTTCGGCCGGCTGCGTCATTTCCTCTGTCCCCCGAGTCAGGCGGTCGGGGGCTTTTGTAAACAGTCCCCGTTCTCCGGCCTCTCCCAGCGAAGCAGCGGCGTCTCCGTCTCGAGAGGGAGGTTGCGTTCGTTTGCCCAGTGACAGGAATGTGAACAGGCCAGATTATTCCTGGTTTGCCTCGCTTACCTGACCCCCCCAACACCCCTGACTTCTACtcctctgaaaataaataaatgaataaataaatgagtaaatcACAAGTGAAAGGTCAGAGCCTTTTAACACTagatttctgtttattttttaaggttaccttgttgttttattttgttgttccttttcttttgccAATCTGTGGATTGGGTGCGCTACAGGAGGTATAAGAATAAAGATGGATTATTGCCA

Function

symbol description
wdtc1 Predicted to be involved in negative regulation of fatty acid biosynthetic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human WDTC1 (WD and tetratricopeptide repeats 1).

NR:

description
PREDICTED: WD and tetratricopeptide repeats protein 1-like

GO: NA

KEGG:

id description
K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010858 True 5677 mRNA 0.54 14 2712527 2723800

Neighbor

gene id symbol gene type direction distance location
AMCG00010857 tmem222,LOC103368846,LOC106570241 coding downstream 5906 2694405 ~ 2706621 (-)
AMCG00010851 NA coding downstream 23117 2687066 ~ 2689410 (-)
AMCG00010848 NA coding downstream 50669 2649261 ~ 2661858 (-)
AMCG00010849 nudc,LOC107737783,LOC107580217,LOC104951062 coding downstream 74472 2630474 ~ 2638055 (-)
AMCG00010850 NA coding downstream 84010 2625003 ~ 2628517 (-)
AMCG00010859 NA coding upstream 38726 2762526 ~ 2767269 (-)
AMCG00010867 NA coding upstream 220395 2944195 ~ 2945511 (-)
AMCG00010868 NA coding upstream 235475 2959275 ~ 2971015 (-)
AMCG00010873 LOC101163182,LOC101080136,LOC107569308,LOC107754925,LOC108229131,LOC107395731,LOC103130392 coding upstream 252656 2976456 ~ 2984072 (-)
AMCG00010871 NA coding upstream 288793 3012593 ~ 3031562 (-)
G102725 NA non-coding downstream 37391 2674563 ~ 2675136 (-)
G102651 NA non-coding downstream 274829 2386723 ~ 2437698 (-)
G102639 NA non-coding downstream 349417 2362880 ~ 2363110 (-)
G102629 NA non-coding downstream 395263 2316765 ~ 2317264 (-)
G102623 NA non-coding downstream 460060 2252119 ~ 2252467 (-)
G102785 NA non-coding upstream 65670 2789470 ~ 2833183 (-)
G102816 NA non-coding upstream 230960 2954760 ~ 2954975 (-)
G102834 NA non-coding upstream 266847 2990647 ~ 2991248 (-)
G102887 NA non-coding upstream 421464 3145264 ~ 3145687 (-)
G102888 NA non-coding upstream 436037 3159837 ~ 3160036 (-)
AMCG00010843 NA other downstream 216081 2481874 ~ 2496446 (-)
AMCG00010806 NA other downstream 1677653 1033830 ~ 1034874 (-)
G102434 NA other downstream 1734400 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 2562698 136369 ~ 149829 (-)
G102762 NA other upstream 16016 2739816 ~ 2778023 (-)
G102774 NA other upstream 34678 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 456170 3179970 ~ 3182619 (-)
G102990 NA other upstream 597013 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 597576 3321376 ~ 3327559 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_02906694_02918246 WDTC1 coding CI01000086 null 2906213 ~ 2918246 (-)