AMCG00010860 (stx12)


Basic Information

Item Value
gene id AMCG00010860
gene name stx12
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2788247 ~ 2795506 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010860
TTTCTCTACATTAATACGAAGTGTGTGTGGAGCAGGGAGCGGTGGTGGTGGGGTCTGTCTAACTGTGCAAACCCGGGAGAGGCGAGCATGTAGCCCGGCCGGCACAAACACAACTGCGCACCGCCAGTTTCTATGACCGGGACACCGAAAACAAGAGCTTTACAGGCCGGTACTCGGGCTCAGATGCGCGCCGTGTGCGGTGCTGTTGTAGCGGGGAAGCCGGGCAGCAACGCCGATACACCGGCTGCATTAGGAGATTTATCGCGGATGTGGGGAACAGCAGAGCATGCGCCATAGGACGGGGATACGCTCACACATACCCGCTAGTACTGAAGAGACTGCTGGCTGCGGATAGTTTTCACAGGCGTGACCAAACACCACAGCAAAGTGATCCAgctttttctccccccctctccttgATCACCTGTCGGAGGGTGATTCACACAGCATCGCCACCATGTCGTACGGGAAGGCAGACAACTACCGCTCACAGCCACGTGACTTCAACACTCTCATCCAGATATGCAGCTCCAACATCCAGAAGATTACACAGAACACTGCTCAAATCAAGAGCATGGTCAGCCAGCTGGGCACGAGGCAGGACACCAGCGAGCTGCAGGACAGGCTACAGCAAATCCAGCACTATACCAACCAGCTGGCCAAGGAGACCAACAGACACCTGAAGGACCTCGGCTCCCTGCCGCTGCCTCTGTCCCCCTCGGAGCAGCGGCAGCAGAAGATCCAGAAGGAGCGCCTGATGAATGATTTCTCCGCTGCGCTCAATAACTTCCAGGCGGTCCAGCGCCGCGCCgcggagaaggagaaggagtcCGTGGCCCGGGCCAGAGCTGGGTCTCGTCTCTCGACGGAGGACAGCAGTCGAGATGAACAGCTTGTGTCTTTTGAAAACAACGATGACTGGAGCCACACGCAGATTCAGACTGAGGAGGCGGCCATCACCGAGGATGACCTGGAACTCATCAAAGAGAGGGAGACCAACATCCGGCAGCTGGAGTCGGACATTATGGACGTCAACCAGATTTTCAAGGATCTTGCCGTTATGATCCACGACCAGGGAGAGATGATTGACAGCATCGAGGCCAACGTGGAGAGCGCCGAGGTGCACGTGGACAGGGGTGCCGAACAGCTGCAGAGGGCGGCCTATTACCAGaaaAAGTCCCGCAAGAAGATTTGCATCCTGGCCCTGGTGCTGTCGCTTGTCGTGGTTATCCTGGGCATCATCATCTGGCAAGCTGCCAAATGAGGAACCACTGCTCtgctcttcttcctcttcccttCTTTTCCTAGTCTTTGAAGCAGGAGCTCCAAGCTGGAGCGGGTGTGGTGGAGTGCGGACGAGGCACGGCCCTTCCTGGCGTCTTTTtaacgagagagagaaatcaatcTTCCATTGGAGTTCCCTTAGAAACATGCTTAGAAGTCTGTGTGGAGACCAGCTAGTcctccttgttttttttctgctttacagAAACTGTATTTATAAGTTAACGATGAAAACAAAGAATGTAATGACTTAACCTTTCTTCCTGTATTTTGATTGTTGTAAACCTTAATGCACTAACACTAAATTgtacttaatgtatttttgggggggcggggagtatatatgtatgtatgtgtataagtTTATGCAAAGGCTGCATATTTCACTTTCAACGGCAAAACCacagttattgttattgtttttgtttttaaaatatatatttaatcaccTCCCATTTCAATAATGTTTTTAGCCGACCGTGCTGCTGAACGAAGCCGACGGGATGTGCTGATAAAAGAGTTGTGAATTTTAAACACTCCTTTGTTGAAAGTATTCAAAGTCATTCACCTGCTTCTTTAAAGTCAGatcattaattaatgtttttcttaagtAAGGATGAATAATGTAGATATGGATTGGggagttgatttttttttctttctgttaagctgttcattttgttttgttttgatgtatatTGCAGACGACGCACGATCTGAGGGGTCACACATGAGACTGAATCTCAAAACATTGTCAACTTTGCAAACACGAGCACAGAAAATGACTGTTTCGAGGAAGACGCCCGATTGAGTGGCGTCTCTTTGCTGTATAATTATCCTGTTaatgattagtagtagtattattatcattattagatCATGGAAGTAAAGTAATATCAATGTCTGAAACAGGCTGCCTGTCCTTGCTCCGCCTCTTCACTCACTCTGTCCATCGGCACTGGGTCAGACCGAGTCTATGGGGATGTTTGTACTAGGTGCATCGTCGTCAGTAGCAGTCGGAGATGAGTTTAGGTTTTCTGGGGTGGGAAAGCATCCCAAAT

Function

symbol description
stx12 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12).

NR:

description
PREDICTED: syntaxin-12

GO: NA

KEGG:

id description
K13813 STX12, STX13; syntaxin 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010860 True 2345 mRNA 0.49 10 2788247 2795506

Neighbor

gene id symbol gene type direction distance location
AMCG00010862 NA coding upstream 1349 2781574 ~ 2786898 (+)
AMCG00010855 NA coding upstream 34254 2745754 ~ 2753993 (+)
AMCG00010853 NA coding upstream 56153 2731030 ~ 2732094 (+)
AMCG00010846 NA coding upstream 143921 2642373 ~ 2644326 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding upstream 173044 2609273 ~ 2615203 (+)
AMCG00010861 NA coding downstream 33290 2828796 ~ 2833103 (+)
AMCG00010864 NA coding downstream 71702 2867208 ~ 2877101 (+)
AMCG00010866 NA coding downstream 97512 2893018 ~ 2895324 (+)
AMCG00010865 epb41,LOC106589039 coding downstream 107297 2902803 ~ 2912051 (+)
AMCG00010863 cf191,LOC106605955,LOC105018927,LOC106592819,LOC102308631 coding downstream 189469 2984975 ~ 2989681 (+)
G102693 NA non-coding upstream 127389 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 338366 2449200 ~ 2449881 (+)
G102628 NA non-coding upstream 470677 2316937 ~ 2317570 (+)
G102622 NA non-coding upstream 535777 2252103 ~ 2252470 (+)
G102611 NA non-coding upstream 613183 2174796 ~ 2175064 (+)
G102843 NA non-coding downstream 231562 3027068 ~ 3027397 (+)
G102859 NA non-coding downstream 298428 3093934 ~ 3130264 (+)
G102860 NA non-coding downstream 304415 3099921 ~ 3103642 (+)
G102944 NA non-coding downstream 637309 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 639413 3434919 ~ 3457657 (+)
AMCG00010856 NA other upstream 10214 2769140 ~ 2778033 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other upstream 26021 2756296 ~ 2762226 (+)
AMCG00010834 NA other upstream 715005 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 723903 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 824282 1945055 ~ 1963965 (+)
AMCG00010884 NA other downstream 506450 3301956 ~ 3310953 (+)
G102921 NA other downstream 536078 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 536213 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 625576 3421082 ~ 3428429 (+)
G102947 NA other downstream 641112 3436618 ~ 3443534 (+)

Expression


Co-expression Network