AMCG00010862


Basic Information

Item Value
gene id AMCG00010862
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2781574 ~ 2786898 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010862
ATGAGCTGCCTGTGGATGGGCAACGTGGGTGGCCTCGTTATGCGCGGCGTGGTGTCGGCTCGTGTGCTGGGCTTCCTGGAGCCCTACATGGACGAGAAGTTCATTTCCCGAGCTTTTGCCACCATGGGGGAGCTGATCGCCGGGAAGCCAGAAACCGGCGTCCGTGCAGTTTATCACACAGCCTTGCTCGTCCGGCCCACGATCTTCGGAGTGGCCCCTGTAATTGGAACGAGCCCCGAGCAGCTCACCGGCCGAGGCGGTGAGCCGTGTGGTAACCCTGGCACGGACGTCCGCTCTTCGTGGCCGTGTCTCACCGTCGCTTTCTCCAGCAGCGCGGCCGGCTACTGCTTCGTGGAGCTCGCGGATGAAGCGCAGGCAGAGAAGTGCCTCCGTAAGATCAACGGCAAGCCGCTCCCCGGAGCCACCCCGGTGAGTACGGCCGCTCCGGACCACGCGGCAGACGCCTGGCCCGACTCGGCGTTTCAGGAAGCGTTGGGCCGACCGGCTGACGAGCAAGATCCCAAGAGGTTCAAGTTAAACCGGGCGAGCTACGGAAAGCAGTCCGATGACAGTCCCGGTTATTCGGTGTTTGTCGGGGATCTGACCCCAGAGGTGGACGATGGGATGGTGTACGATTACTTCCTGACCAGCTACGCGTCCTGCCGAGGAGCCAAGGTGGTCCTGGACAACCTGGGCAACTCCAGGGGCTGTGGGTTTGTGCAGTTCGCTGAGGAGGAGGACCAGAAGCGAGCCCTGGAGGAGTGCCAGGGGGCCATGGGCCTGGGGGGGAGGCCCCTGCGACTCAGCCTGGCTGTAAACAAAGGGATGAAGAACAGCTCCCCGGAGGCCGTCTACCCCCAGGCCTACAACTACAGCCACGGCCAGTACTACCAGCAGTATTACGATTACTACACCCAGTGGGGCTACGACCAGAACACGGGCAGCTACAGCTACAGCTACCCGCAGTACGCCTACACCCAGAGCACCATGCAGACTTATGAAGAAGTTGAAGATGATGATCTGGAAGACCCCAACCCCCAGCTGGATGTCACCGAGGCCAACCGGCAGTTCATGGACCAGAGCGAGGAGCTGTACGACGCGCTGATGAACTGCCACTGGCAGCCACTCGACTCCGTCTCCTCCGAGATCCCCGTCTCGTTCTAGGGCCAGGCGGCGGGACGCGCTTCTGGGGCAGGAGTCTGGGAACAACATGGCGACCCGAGACCTTTGTGAAGCGAGCGACACGGACGCGGCAGGAAGGTCCTTCACTGGGCTGCGTGCAGCGATGCGGCGCCTGTGACTTTGAAGAATGGTGTCCCTAAAATAGTGATTGACTAAAAAAAGACCCCCcttaaaaattaaacagaagTTGACTTGCCCCACAGATGTACATGATGTACCCTGTAAGCTTAGGCATTGGTGAGAGAACTGAAGAATCGTTGTCTTGCTCGTTTTATGTGCTCCTTCTCTAAGGACCTCTCGCCAGATTCCTCCACACAGGCGCGTTTCGGAGCCTCCGTCTGTAGATGGCGTGTAGATCGAGAGATCCACCCCGTGTTTTGGGTGAGGTCGCTGAAGGAAATGACTGGAACCCAAAGCGCCACATTGTGAAATCTGTCCCCTATTTCGCTGCCTTAATAGTTCCCTCTCTCTTCTAGACGTCTGTAAACTTCCCTGCGTCCCCCGGGGTCGTGTCTTGTTCTGTacgtgtggttttgttttttgcggGGGTTTTTGGTCGGGGTGGGGGTGTGGGCATGCTAACTAATTTTCACACTTACAGTTGATGCATCAATATCGATATCGACTTGGGTGTAACTCATTTTCCGCACAGTTGAAAGCAGTTAGTAGGTCGTTGTTTCGACGCAGTAGCTGTAACTGACCGGGTCCCGGTGGTGTACCTTGTTACAATGAATAGGATTCGAGTGGAACAAATACACTGGAAGCAAAGACTTGATGGAGCTTGTCTTTGGTGTCACCGTGTTTTGGTCTAAACTGGAGAAAGATTGTTCTGATGGGAGAAACGGCACGCCTGGGAAAGTGACAAAATACACCACAAGTACACTAGAACCACTGGGAGTATATTTTTAGATCTTAAAAATTTAAATGTCTGATGCATACtatgaataattttaataaatttatattttgatgaaTAAA

Function

GO: NA

KEGG:

id description
K25102 TRNAU1AP; tRNA selenocysteine 1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010862 True 2160 mRNA 0.55 9 2781574 2786898

Neighbor

gene id symbol gene type direction distance location
AMCG00010855 NA coding upstream 27581 2745754 ~ 2753993 (+)
AMCG00010853 NA coding upstream 49480 2731030 ~ 2732094 (+)
AMCG00010846 NA coding upstream 137248 2642373 ~ 2644326 (+)
AMCG00010847 LOC106588610,LOC105012636,LOC108411273,LOC107700831,LOC104926085,LOC103368849 coding upstream 166371 2609273 ~ 2615203 (+)
AMCG00010838 NA coding upstream 413015 2364210 ~ 2368559 (+)
AMCG00010860 stx12 coding downstream 1349 2788247 ~ 2795506 (+)
AMCG00010861 NA coding downstream 41898 2828796 ~ 2833103 (+)
AMCG00010864 NA coding downstream 80310 2867208 ~ 2877101 (+)
AMCG00010866 NA coding downstream 106120 2893018 ~ 2895324 (+)
AMCG00010865 epb41,LOC106589039 coding downstream 115905 2902803 ~ 2912051 (+)
G102693 NA non-coding upstream 120716 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 331693 2449200 ~ 2449881 (+)
G102628 NA non-coding upstream 464004 2316937 ~ 2317570 (+)
G102622 NA non-coding upstream 529104 2252103 ~ 2252470 (+)
G102611 NA non-coding upstream 606510 2174796 ~ 2175064 (+)
G102843 NA non-coding downstream 240170 3027068 ~ 3027397 (+)
G102859 NA non-coding downstream 307036 3093934 ~ 3130264 (+)
G102860 NA non-coding downstream 313023 3099921 ~ 3103642 (+)
G102944 NA non-coding downstream 645917 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 648021 3434919 ~ 3457657 (+)
AMCG00010856 NA other upstream 3541 2769140 ~ 2778033 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other upstream 19348 2756296 ~ 2762226 (+)
AMCG00010834 NA other upstream 708332 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 717230 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 817609 1945055 ~ 1963965 (+)
AMCG00010884 NA other downstream 515058 3301956 ~ 3310953 (+)
G102921 NA other downstream 544686 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 544821 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 634184 3421082 ~ 3428429 (+)
G102947 NA other downstream 649720 3436618 ~ 3443534 (+)

Expression


Co-expression Network