AMCG00010875


Basic Information

Item Value
gene id AMCG00010875
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3145114 ~ 3167623 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010875
ATGCCACTACCAAATCAGTGCGGAACCAAAACGTCCCAGCCGCCGCACCGACGCCCTGCGTGCCCTGCGCCTCCACGCCGCGGCTCCGCAGCCGCTCACTTCCTGAAGCCGTCTGGCGGGTCACATGACGTGAGTGCGTACGCGCCGTGGCCGAGAGGGAAGATGGCGGACGGGGAGGGAGAAACGAAGCCTGAGTGGCGAGATCAGCCGCAAAACACCGCGGAGAAACCTCTAATCGCAATGGACAGTTTACTGGACACCTTCGGCGGGCTGGAGGCCGATCTCCGGCGGCAGGAGGTCTCGGTAGCCGCGTCCGAGGACTACTGCATGCGCTTCTGCCAGGCGCTGATACAGTACGCCGGCAGCAGGAACTCCATGCAGCACGCCCTGCCCTTGCTGGAGGTGTACCGGCTGTCTATCCAGAGTTTTGCCGCAGCCAGGTCTCACCTTAGCCCCGAGTCGGACAGCGTGGGCCTGGTGCTGAAGAGACTAGCACTGAGCTGTTTTGAGCTGCTGCTGTCAGTGCCCGATACTGAAATCTCGTATGATGCCTGGATGCAGTTTCACCACTCTGTGCAGGAGATTGAGTCCACAGCACCATTGTGTAAATTCATCACTCTGGAAGGACCTCAGTTCCTGGAGATGCGGTTAAAGCATTTGCTGAAAGTGGGGGACTCCACCAAGGCCATGCTTCTGGCCAAGTGTTGCACCGAAAGCGATGACATCGTCAACAAGACCGCCTTTCGCCAGACCTACATCTCGCAGCTTTGCAACCTGCTGCCCGACGAGGAGGCCATGAAAGAGATCTCCAGCGTGGAGGGCAAGGAGGTCTTGGATATCATCTGTAACCTGGAGGCAGAAGGACAGGAGAACACTGCCTTCATCCTCTGCACGACCTATCTCactcagcagctgcagcaggagaGCACGTACTGCTCGTGGGAGCTGACCCTCTTTTGGAGTAAGCTGCAGAGAAGGATCGACCCCTCCCTGGAGTCGTTTCTAGAACGGTGCCGGCAGTTCGGTGTCATTGCCAAGACTGTGTACCATCTGATTTTCTTGGTCAGAGTCATCCAGACAGAGGCAGAACAGCAAGGTCTAGCGGTGTCCATCGAGCTGTGTGTCCGAGCTCTGCAGATCCCACAGCCGGTTGACCCACAGACCAAGACGTCCGTCTGCAAAACGGTGGCATGCCTTCTGCCCGATGACCTGGAGGTGCTCAGGGGCTGCCAGCTCACAGAGTTCCTCCTCAGCCACTCCCAGCAGGCCTATGCTTCTCTGGAAGAGCTCTACCAAAAGCCAGACCAAAAGTACGACGAGGAAAATGGCATCGTCCCCAACTCCTTGCGCTGCGAACTCCTGCTGGCACTCAAAGCTCACTGGCCCTTCGATCCCGAGTTCTGGGACTGGAAGACCCTCAAGCGGCACTGTCTGCAGCTGCTCGGAGTGGAACTGCCAGCTGGGTCgcaggaggaagaagaagaagaggaggaggagcaggaagaGAAAGCCTTTGCCAGGCCAGATGCAGGAGAGCTGTCGAGGGACTGCAGCAGGGATCGGTCAGACCAGAGTCAGTGCAAGGAGACTGAAGATGAGGACTGGGAGGACAAAAGTCAGGTCGGGCAGGccctgaagaagaagaaggaggtggGCACTTCGGAGCGCTACCAGAGGTGGCTCAAGTACAAGTTCTTCTGCCAGATCTGCAAGAGGGAAGTGATCGAGGCGCGGATCCTGCATCACTCCAAGATCCACCTGGAGGATGGCGTCTTCACTTGCCCCGTGTGCCTCCAGAAGTTCGTGGGCAAGCAGGAGTTCATGCCACACATCAGTAACCACGTCCGCATGCCGGCCAGGAGCAAGAATccccagaaaaagaaaaaggtaaaaaagAAGAAGGTGTTAAAGATGGAGGATGACATGGACGAGGACGAGTTGGACGACGTGGAGCCGGGGGAGATCAAGCTGGACCCGTCCCTGATGATGTATTTGCAGTCCACCGCGGACCCCGAAGTCCTGGATGATTTACTGCAGCAGGCGACGCCCAGCAAGCCGGCGGACGATGACTACATCACGTTCAGTTACATCGACGCCCACTTCGAGCTGCAGGACCGAGACGTGTACCCGTGTCCTGCCACAGACTGCACCCGCAACTTCAAGCATTTCAAGTACTTAAGCGTGCACTTAAAAGCAGAGCATCCAAAGCCCGACGACAACATAAAGCACTATTTGGAGATGAAGGATCGCCGGGAGAAATGCACCTTCTGCCGCCGCCACTTCTTTACTGCCTATCACCACCGGAAGCACCGGCCCGTTCACTACGGAGAACAACCGTACATGTGCGTGGCTATCGGCTGCGGGGCTCGGTTCAACACCACCAATGAGCTCGTCTCCCATAAGCAAGGGCACGGCTACCGGCTCAGTTACCACTGTGAGCTGAAGGGCTGCAGCCTCACCTTCAGTGACTTGGGGCAGCTCTACCACCACGAGGCCCAGCATTTCAGGGATGCGGCCTATAGCTGTCCCCACCCTGGCTGCAAGAAGTTTTACTATTCCAAAAAGGAGTTTATCAAGCATCTGGCCGTCCATGGCTTAACCTTCTCAGAGGAGGATTTTGTTGCTCAGAGAATCATGAAACGAAAACCAGTGGATCCTTTTGCAGACTCGCACTCTGGCGCTGCCATGGAAGGAACTACAGTCTCTGAGGCCGGTTCAGGTGACGTGCTTGACGGCGTAAAAAGAGAGGTGACGGAGGAGGGACGGGCATCTACGCCGTGTGCTTCCTCTTCCCAGCCTTCAACCAGCAAGGAGCTCACGGGCACGGTGAccagtgtggctgtgtgtttcGATGGCAGAAGGTTCACCTGTGGTTTTGAGGGCTGTGGACGGACGTTTTCCACAGCCAGGGATATCCAGAACCACCTGAAGAACATGCACCCATCACAATTTAAGCACCAGAAAAAGGGACAAGGTGTGAAGAAAGCAGCGAGCAAGGAAAAGGGCTCAAGGACTAAGAACAACAAAGAGCGGAGCAGCCAGGTGCCGAGTGCACAAGGCCATTCCAGCTCTTTGCCTCCTGAGGCGCCCGACCAAAGTATTTCCCCTCCTCCTGCAGCCGACCCAGAACCTGTAGCGGAGTCGCCAAGCCCCGGCGTTGAGGACCCCCTCGGGGACATCCTGCTGGGCTTAAGTCAGCTGAATCTGCAGGGCTCCACCTCAGCCCCTGTCTCTGGTCCATGTCATCCTATCTCAGGGTCCTCCATTTCACAGGTGTCTTCACCCTCCACCACTTGTGCTAACTCCCCTGCCAAAGCAGCAGGGAAGAAGGCGGCTTCCAAGTCCCAGCCGGAAGCATGCGGTACCCAAAAGCGTCCGCCTCCAACGCCGAAGGTAAAAAACGAAACGCCCAGAAGCCCTTCTCCAGCTCCACAGCCACCCCCAGAAAAAGACGAACTCGTAAACCAGTTCCTGGTGCAGCCCTCTACAAAGCCTTACGTCTGCGAAGTCAAAGGCTGCCCCTTTAGAAGTGTCACCAGCTCCGCCCTCATGGTACACTATCTGAAGAAGCACAATTTCTCCAAGGAGAGGGTGAAGGGAATGGAAATCTTCAAATCGAGCAAGTTCAAGCCATTCAAGTGCCACCTTTGCCCCAGGGGATTTAGTAAGAAGTCCGAACTAAGGGTCCATTTCATTAGCAAGCACAACCTCAGCAAAGTGTTGGTGGAGCAAATGAGCTGCTCCCTGAAAAGGAGAGACAAGAGCATCAAGGGTGTCCCGCCAAAAGCCTCTCATCCACCAGACACTGGGGTTAGCCTTAAGGCTGCAGCTAGACCAGAAAAAAAGCAGCCTGTAAAGCTGCAGCAAAGCAAACAGGCCCCGGGTTGGCAGCAGAAGTACCGTAAGAAAAAGGGTGTCATGTGGAGGACTAACAGGAAGTGGGAAAATGGAATCAAGTTGGAAGACAAGGACAAGACTAGGGACATGAAAACCCCGCCCCCCCTGGCTTTGCAGGACAACGGTGatgaggaggaaggggaggagggAGTAGCCCGTGAAGGCAGGGGCAGCCGACGCTTAGTGGCAAAAGGCAATCTCTGTTACATCCTGACCAAATACCACAAGCCTTTCCACTGCGTGCACAAGGGCTGTAGCTCGGCCTTCACCAACCAGAATGGACTGATTCGACACCTCCAGTCAGTGCATCGATACAACCGCTCTCAGTTGTGCCTGGAGGGAGACCTGCAGCAGGGGGGAGCTGCCAAGAAAGACCTGGTGAGACCCAGACGGCTGCTTTGCAAGCACAAGGGCTGTGGGAAGCATTTCCACAGCTCGTCTGGGCTGTCTAGGCACTGCCGGGAGTCCCACCCTGCGAAACAAGACTGTGCAGAAACACAAGAGTCGACAACCCCTGTTTTAGAGGACCCCATACCTCGCTTCAACTGCACCTATAAAGACTGCACAGCCAGCTACCACCTCTACAGCAGCTTGCTCCGCCACATACGCAGCGTCCACCGAGGCCAGGGCTCGGTACGCTGTACCTTCGAGGGCTGCACTCGCGTGTTTACCCAACACTCCAGCTACAAGCAGCACGTCTTCTACAGTCACTGGGACTACTACGACTCCTTCGTTCTCAGGCTTCAAAATGACAACGAGAAGGACAAGCCACCCACCGGCTGCCAGAAAAAGCTCATTATAACCACCAGCCAGCCGTTGTCACAGAAAGGCAGCCCTGCATCCAAGCTACCTCTTCGACAATCTTTGAGAAATACCTCGAGGTCTCAAGACACCCCAAAGAAGGAAGAGAGTGCGAAACAGCAGCCCTCCAATGGAAATCAGACTAAACTGGTCTTCCGAACCCCTGAAGAGGCCCTGCAGATGTGCCAAGATAAGAGCTTTGCGGTTGCGTACCCTTGCATGCTGCAGGATTGCGATTCAGTGGTCACCTTGTCGAAGAGCCTGCGACGACACTATGTACGGTGCCACAGGCTGTCGGAGACTTATGTCAAAGTCAATGTGGAGAAGCTGGTAAACAATGCGGAGAAGCTGGAGGAGTTGATTCAGAAGAAATCGGCACTTGCAGCCCATTCTGAGGTGGACAGGACCCCTAATGGCGTCCTGAAGGTGGAGTACCAAGCGGAGCCAGAGAACCACGTGGGCCCTGAACTGCCTATGAGTTTGCACTCCATCAAAACAGACCCTCTGGGTGGACAGGATCCCTTGGGTTTTAATGAAGAGGGCTCTGAAAATAACCTGCTGGTGGACGCGGATGATTTGCTCTACGGGGAGGCTCTGAAGAATGGCCACAGTGGCCGCAGGGAGCAGACCCCAAGGAAAAGCCACAGCTGCGAGGAGAAGGCCAAGTTGCACTCGCCTCCATCTACTCCATCCTCTCTACGCTTCACATTAGATGAGGGATTCCTGGATTGTTCTAGTAAAGGTGGTGGGAAGGGCACGGGCACTGTAACCAATCCCTGCCGGCAGCCCCTGAAGCGCAAGAACGAGCTGGCCGAGCCGCCCTTCACCCCCCCCAAAGACAATCAGCAGAGCCGACTTCCTCACAGCCCCACCTCCCGGACTTTTGACTTGGCGGGTTACAAACCCATGGGCTTCGAGTCGTCCTTCCTCAAGTTCATACAGGAGAGTGAGGACAAGGAGGACGAGTTTGAGGAGAGCGGCTCGTGGGAGTCGCGGCTGCCCGACGCCCAGATCGTGCCGCGGCGCCGGGACTCCCACCGCCGGAGTTGCTCCGTCAAGGAGAACAGCCAGAGCGGGCTGGCGCTCACACGCAGTCGCAACGGCTCGCTCGTCCACGGCAAGCTTTCGGCCTTCAAGCCCCGGCTGTCTCCGGGGGAGTCGGCCACGGTGAAGAACTTGACGTCCATCCTGGACAAAGCGCTGACAGACTGTGGGGACCTTGCCATAAAGCAGTTGCATTACCTCAAGCCAGTGGTAGTGCTGGAAAGGTCCAAGTTCTCAACGTCTTTGTTAGATCTCTTCCCAGCTAAAAAGACTGATAAGCTTCGCCTTGTGAGTCCTTAAACTCTGGACGCTGACGGACAATGTTGCTCAGCGAACGTAAAGactgtttcagtatttttttttttcttttctttttttaactattaaaaAGAAGTTGCCAAACTGTAAAAGCTCAAGTACCTTAACTGATTATAGCAGATAATGAATtgtatctgtatatgtatatgtatacacatacaaGTGTAGGACAGTGGTTTCTTAGATTTGTTAACAGGATGTTCATCtgcaaaaacttttttttttttttttttcaaaattaattctaATAAACGATTCCGTTCAATGGTGCTAAATTAATATACTCCTTTGAAGTTTGAAACTTCCTTGATACATCTTTGCATGGTTGTATACAtgatctgtttttcattaaagggAGGTGGGAGGAAAGTTTTATATGATCAGTTGAGTAATAGACTTGAATGTGCACTTCAAAAGTGGTCCTTGTAATATAATGTACACTACATTCATTTTTctatgttctttattttgtattttgtttaattgagttAAATACCAAATGaactaccccccccccactccacacacacacagacagtatgTGGACATCAGTCACTGCTACTGTTTATCAACCAGTCACAAATGGAGATCTGCTGGGGAGTGCTGAGGTGTTAAGAATATAGCAGTAATTTTGAGAAGTCATGAACAGGAAATTCAAAGTCTGGAAGTGTTTGGGGAAGAGCCTgccatttcaatgttttcagttactttgtttttaaagtgcgTTCCTGAAGAGCTGGTTAATAGTAACAAGTTCCGCTGCGTTTCCTTCAATTCTCGGATGCCCGTGTACCCATAGGTGTGGAAACCAGACATTCAGAtctgttttatacatatttcagaCAGCAGAACAGTTATCCTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010875 True 6925 mRNA 0.53 8 3145114 3167623

Neighbor

gene id symbol gene type direction distance location
AMCG00010876 NA coding upstream 16865 3112434 ~ 3128249 (+)
AMCG00010870 NA coding upstream 136823 3004761 ~ 3008291 (+)
AMCG00010869 NA coding upstream 146011 2990631 ~ 2999103 (+)
AMCG00010863 cf191,LOC106605955,LOC105018927,LOC106592819,LOC102308631 coding upstream 155433 2984975 ~ 2989681 (+)
AMCG00010865 epb41,LOC106589039 coding upstream 233063 2902803 ~ 2912051 (+)
AMCG00010874 zmpste24,face1,LOC107670834,LOC107654896,LOC102792402 coding downstream 5199 3172822 ~ 3179031 (+)
AMCG00010882 LOC104921322 coding downstream 12337 3179960 ~ 3182656 (+)
AMCG00010881 LOC106588497,LOC102218321,LOC107094257,LOC103154989 coding downstream 15496 3183119 ~ 3188870 (+)
AMCG00010885 NA coding downstream 110204 3277827 ~ 3283330 (+)
AMCG00010889 NA coding downstream 182133 3349756 ~ 3386357 (+)
G102859 NA non-coding upstream 14850 3093934 ~ 3130264 (+)
G102860 NA non-coding upstream 41472 3099921 ~ 3103642 (+)
G102843 NA non-coding upstream 117717 3027068 ~ 3027397 (+)
G102693 NA non-coding upstream 484256 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 695233 2449200 ~ 2449881 (+)
G102944 NA non-coding downstream 265192 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 267296 3434919 ~ 3457657 (+)
G102959 NA non-coding downstream 292239 3459862 ~ 3462503 (+)
G103035 NA non-coding downstream 425045 3592668 ~ 3593407 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding downstream 1120400 4288023 ~ 4290680 (+)
AMCG00010856 NA other upstream 367081 2769140 ~ 2778033 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other upstream 382888 2756296 ~ 2762226 (+)
AMCG00010834 NA other upstream 1071872 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 1080770 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 1181149 1945055 ~ 1963965 (+)
AMCG00010884 NA other downstream 134333 3301956 ~ 3310953 (+)
G102921 NA other downstream 163961 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 164096 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 253459 3421082 ~ 3428429 (+)
G102947 NA other downstream 268995 3436618 ~ 3443534 (+)

Expression


Co-expression Network