AMCG00010876


Basic Information

Item Value
gene id AMCG00010876
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3112434 ~ 3128249 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010876
ATGTCTGGGTCCTGTGCCGCTCCACAGTCCAACACTTCCACCGAGGTGCTGGAGGACATCCAAGACCTCACAGGAGAGCTGGGTGCTAAACTACCCACCAACGCCCAGCCACTAGAACTTCTTGCCCACCCCTGGGAGCAGCACCACGGTGGCCCTCAAACCGGAGTGGGCAGCGGAGCGTGGGGGGGGCCTCCGAGTGTGGTCCGAGGTGACACCGACACGGCGTTCAGATCCCAGAAGACCAGCGGCTCCAAGACTCCGGTCATCCGCAACCCCCAGCTCCGCAAGTATTACCTGAGAGAAATGGCGCCGCTAAGAGAGAATACGAAGGGTAAACCTGCGAGTCCGGAGACGTCGGAAGGAGTAGCTGAATACACAGTGCATCCTGAAGACACTGTGTTCAGCCTGGCCTCCCAGTGTCACAGCACGCCCAGCCAACTGGTGAACCACAATAGACCGAGCTCACACACCCTCCTACCCGCGCAGcggCTGTCCATCCCAGACCGGAaaccttcctctctcccccaggcGGTGCCTCCTGACCCCAGCGACTCTGTTCCCAGTTCCCCCAGCTGCTCCCCCTCTCCGGACGCTGACTACGACCAACTCCTGGACGTCGAGACGGTGCCAATGCCTGATGGACAGCTGTGCCTCCTGGCCCTGCCCTCGGAGTGTGACCCTGCTCAGGGAGAAGGGCCGACCACCATGCACTACCTGAAACTGTGCTGCCGCTACATCACGGACCGCAAGGGTGTGGTCTCTGGGATCCTGCTCGTGACGCCCAATAAGATATTTTTCGACCCCTACAAGTCCCACCCCCTGGTGATGGAGCACGGCTGTGAGGAGTACCTGCTCTCCTGCTCCGTGGACAGCATCCTCAGCGCCTCCTTCTTCTCGGATATTTCCCGGGTGCATTTCAACACTGCCTCTGCACGGCCCAGAAGCAGGAAGAAGGTTCAGAAGCCCAAAGCTCTGGGCCTGCTGAGACACAGCAGAAGTGGTGGAGCGGTTTCTGAAGTGAAGCCCAGTACCCCCTCGGCCCCTCAAGGGGACAAAATCCACACTCCCCCCCTCGCCTCGGACACCCACGACAGGGGCTTGAGCTCAGCGCTGCGACGCAAGCTGTCTCTGGAAGATGGTGGTCCGATGGGCCGGGGGAAGGTGGCCCACTCTGTAGAGGCTGAGACGCTGGGGGGGCTGGCTGCAGCCTGGGGCTTCCACGGTGACAGAGCCTCGGGGGAGACGCTGCAGGAGGCGGAGGCGGGGGCGCTGGGAGTGCTGAGCAGTGCTGCCACCTTCTGCTGCGGAGGACTGGACGTGGGGGGCAGGGCAAGGGCAGAGCCGGCGAACAGCGAGGCCCCACAGCGTCAGTCCGCAGGGACCATGTTGTCAGGCCCAGCCTGCCTCCCCCCAGGGCGCTCAGCTCTGATGTTCCTGAGGCTACGACTGGCGGTCTCGCCCAGGAAGAGGGTCCTGTTTACCCCACAGCCACCCACTGCCAAGGGGCCGGCCACCAAGGACGCCTGGTTCACTCTGTCCCAGGAGAGTTCTGACGAGTTATACGCCTACCTGAGCCAGCAGAGGCCCGACCTGTGCCTCTTGGAGGGGGgagaggacgaggacgaggacgaggaatTCGTCCTGGTGGATGAGAAGGAGGAGGTCTCCCCCTCAGAGAGCCGCACAGGGGAGGACTGGGAGGTACGGTTGACCGCCGCTTTTACCGCTTTGAGATTTGAGAATCCCAGGATGGTCTCCGTGGATGATGGCGCAGCGAGGTCACTCATCTTGGACAAAGAGCCTGAAGGGCTGGACGACATCCTGGAGAAGACCAACATCTTGGAGGCCGCAGACATCCAACAGATCTCCAATCACTTGCCGCCTCGGACCGTTGGCCACTCCTGGAAGCTGACCTACAGTACCTCAGTCCACGGCTCCAGCCTGAAGACGCTCTACAGAAAGCTGGCCCACAGCGAGTCCCCGGGGCTGCTGGTCATCAAAGACTTCCATAACCAGGTGTTTGGGAGCTTCATGTCGCACTCCTTGCGGCCCAGCGAGACATTCTATGGCACCGGGGAGACCTTCCTGTTCACCTTCTACCCCGAGTTCAAGTGTTTCTACTGGACGGGAGAAAATTCCTTTTTCATCAAAGGGGACCTGGACTCAATTGCCATTGGCGGAGGGAGCGGTCACTTCGGCCTGTGGCTGGACGAGAACCTGTACCTCGGCCGGAGCAGTTCCTGCAGCACCTTCAACAACAGTCCCCTCTCCAAAACGGATGACTTCCGGGTCATGGAGATTGAGGTGTGGACCTTCTACTGAAGCCCAGGGAGATGCTGGAGTGCACTGGCCAAGCCCATGGTGTCTCCTGCCAGCGGGCACTCGTGCAACACAGCTGaacccgccccccccccacccctctttGTGCTGTTCTCATCTTGGAGGTCTGTAGGTTATGGACTGAATTCTGACCTCTTGCCAGAAGAGGCAGGCTGGGAGCATGAAGTGTAATGGTGGAGGGATGGAGGTACTGTCCGTGAACCTTAACCAAGGAGGGTTTATTGTTCGGAGTTGATTTGAGCTTCCCTAAGGAGAAGGATTACTGTATATGAGGTCACTTGCATGTGGTTCTTTTCTACAGAGCCCTAGTGCGCAGTGTGCTTGTACAAAGCCATGCTTCTTGCTTCAGTGTGGTGCTTCGATAGCACAGTGTCTAGCTTTGGGTGCCCGCTGCCGTTTCCCAACGCAAGCAAATGCGTGTAACTACGCCCCAACGGTTTGGTAAACCTGTCGCAGAGCTTCATGAACAAACTCATTTCAGAGATGTGTCAATGCTAGGCTTTGCAAACACATCAATGAATGCAGTAAAGTAGGGCTGGTTTACAAAATGAGCTGCAGAACAGGGATTTAATGGCCTGTGATTGAAGTAATCCCTCTCTCATGAGAGAGCGCATATTAGAAGTCGATGCTCTTTAATCACAGCTCCACACAGTATTCATTTTCatgctgttttctttctcaGATTTGATTCCTGTTTACCTGTATCTGTATCACATAAGCCACAGCTAACAAAACAGCTCTACTAAGCATGTACTTATACACTGTCCTGtataaataaaagcttaaaCAATTAACACTAGGCTATCCTTCCATGGCACTCCACTGAATATTTATTGTGCATTACTTCTCTTCAACCTGCGGTCACCAGGCTATATAGTAGGAAACCTCTTGAAGTCAGTCTGTGCCACAAAGAGTAGCGTGCAAATTACACACAGGGATGTACAACAGTGCGAATAATAAAGCTATTAAAAGCAGAACTGTTCGAAGACCCTTTACTGGTCTGTGTACGACTTTTGATTGACTCTTCTCCTGCTTCCACACTATTGTATATTATTCAGCACTATTTCTGAAGTGGAAAGAGGAAAGGCTTGTGTTCAAGAACTGGTGTTGGGAGTTGCTAACCTATTACTGATACTAATGATGCGgggcgtgttttttttttcttgatctCAAATGAATGCTcacttttgtttctgctttcaaTACAAGATAAACTATCTCAGCTCCACCACTCCCAGTTATAACTCTGcatctctcttctctttcaGCAGGGTTCAACTACAGGGTTCAAGTAAAACTACAAAATTAAGAATGCAACACTTTAAATGCCAGTATGACTGAATATCGTAAATAATGTGTAGAAGTGTGGTATTATAAATAGAATATCGTGGCATTGTAAAATAGAACATTGGGGGGTGTAAATAGAAGTGTGGTTTTGTAAACAGAATAGTTTGGTTTTGTAAACAGAATATAGGGGGGATTATAAATAGAATATTGTGGTGTTGTAAATGGCACACACCAGAATTCTACCTTAATAGTGTTAAGGGAGCCCTCAACACCTTAAACGTGAGATGAGGAAACTGGAACAGCAcaagaaagatttttttttttctccttgtctTCAGTCCTACCTGCTGGTACCTCCAACATGAGCGTCCTCTTCCTGCTGTTACAGCGTTGAAAGTCAAACGCCAAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010876 True 4040 mRNA 0.53 15 3112434 3128249

Neighbor

gene id symbol gene type direction distance location
AMCG00010870 NA coding upstream 104143 3004761 ~ 3008291 (+)
AMCG00010869 NA coding upstream 113331 2990631 ~ 2999103 (+)
AMCG00010863 cf191,LOC106605955,LOC105018927,LOC106592819,LOC102308631 coding upstream 122753 2984975 ~ 2989681 (+)
AMCG00010865 epb41,LOC106589039 coding upstream 200383 2902803 ~ 2912051 (+)
AMCG00010866 NA coding upstream 217110 2893018 ~ 2895324 (+)
AMCG00010875 NA coding downstream 16865 3145114 ~ 3167623 (+)
AMCG00010874 zmpste24,face1,LOC107670834,LOC107654896,LOC102792402 coding downstream 44573 3172822 ~ 3179031 (+)
AMCG00010882 LOC104921322 coding downstream 51711 3179960 ~ 3182656 (+)
AMCG00010881 LOC106588497,LOC102218321,LOC107094257,LOC103154989 coding downstream 54870 3183119 ~ 3188870 (+)
AMCG00010885 NA coding downstream 149578 3277827 ~ 3283330 (+)
G102860 NA non-coding upstream 8792 3099921 ~ 3103642 (+)
G102843 NA non-coding upstream 85037 3027068 ~ 3027397 (+)
G102693 NA non-coding upstream 451576 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 662553 2449200 ~ 2449881 (+)
G102628 NA non-coding upstream 794864 2316937 ~ 2317570 (+)
G102944 NA non-coding downstream 304566 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 306670 3434919 ~ 3457657 (+)
G102959 NA non-coding downstream 331613 3459862 ~ 3462503 (+)
G103035 NA non-coding downstream 464419 3592668 ~ 3593407 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding downstream 1159774 4288023 ~ 4290680 (+)
AMCG00010856 NA other upstream 334401 2769140 ~ 2778033 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other upstream 350208 2756296 ~ 2762226 (+)
AMCG00010834 NA other upstream 1039192 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 1048090 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 1148469 1945055 ~ 1963965 (+)
AMCG00010884 NA other downstream 173707 3301956 ~ 3310953 (+)
G102921 NA other downstream 203335 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 203470 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 292833 3421082 ~ 3428429 (+)
G102947 NA other downstream 308369 3436618 ~ 3443534 (+)

Expression


Co-expression Network